View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_276 (Length: 261)
Name: NF9264A_low_276
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_276 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 21086279 - 21086529
Alignment:
| Q |
1 |
aactttacagacaacaatggagttaaccaacttcgaggggttggtctagtagtaaaatgacaggccttggatctggaagttccaggtcgtgacccgctag |
100 |
Q |
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| T |
21086279 |
aactttacacacaacaatggagttaaccaacttcgaggggttggtctagtagtaaaatgacaggccttggatctggaggttccaggtcgtgacccactag |
21086378 |
T |
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| Q |
101 |
tccccttggaaataggtaaatggaaattcctttaaaagtggtttttgagccctgaagtcttcttcctc--tttagnnnnnnnnacatnnnnnnncaaatt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| |
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| T |
21086379 |
tccccttggaaataggtaaatggaaattcctttaaaagtggtttttgagccctgaagtcttcttcctctttttagttttttttacataaaaaaacaaatt |
21086478 |
T |
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| Q |
199 |
gctagtagaatttcacaaaatcaagacaaaattttaagaatgggatatttt |
249 |
Q |
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| T |
21086479 |
gctagtagaatttcacaaaatcaagacaaaattttaagaatgggatatttt |
21086529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 21064493 - 21064743
Alignment:
| Q |
1 |
aactttacagacaacaatggagttaaccaacttcgaggggttggtctagtagtaaaatgacaggccttggatctggaagttccaggtcgtgacccgctag |
100 |
Q |
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||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
21064493 |
aactttacacacaacaatggagttaaacaacttcgaggggttggtctagtagtaaaatgacaggccttggatctggaggttccaggtcgtgacccactag |
21064592 |
T |
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| Q |
101 |
tccccttggaaataggtaaatggaaattcctttaaaagtggtttttgagccctgaagtcttcttcctc--tttagnnnnnnnnacatnnnnnnncaaatt |
198 |
Q |
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| T |
21064593 |
tccccttggaaataagtaaatggaaattcctttaaaagtggtttttgagccctgaagtcttcttcctctttttagttttttttacataaaaaaacaaatt |
21064692 |
T |
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| Q |
199 |
gctagtagaatttcacaaaatcaagacaaaattttaagaatgggatatttt |
249 |
Q |
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| T |
21064693 |
gctagtagaatttcacaaaatcaagacaaaattttaagaatgggatatttt |
21064743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 21041397 - 21041646
Alignment:
| Q |
1 |
aactttacagacaacaatggagttaaccaacttcgaggggttggtctagtagtaaaatgacaggccttggatctggaagttccaggtcgtgacccgctag |
100 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||| |||||| ||| ||||||||||| |
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| T |
21041397 |
aactttacacacaacaatggagttaaccaactttgaggggttggtctagtagtataataacaggccttggatctggaggttccaagtcatgacccgctag |
21041496 |
T |
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| Q |
101 |
tccccttggaaataggtaaatggaaattcctttaaaagtggtttttgagccctgaagtcttcttcctc--tttagnnnnnnnnacatnnnnnnncaaatt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| |
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| T |
21041497 |
tccccttggaaataggtaaatggaaattcctttaaaagtggtttttgagccctgaagtcttcttcctctttttagttttttttacataaaaaaacaaatt |
21041596 |
T |
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| Q |
199 |
gctagtagaatttcacaaaatcaagacaaaattttaagaatgggatatttt |
249 |
Q |
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| T |
21041597 |
g-tagtagaatttcacaaaatcaagacaaaattttaagaatgggatatttt |
21041646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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