View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_284 (Length: 260)
Name: NF9264A_low_284
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_284 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 118 - 253
Target Start/End: Complemental strand, 37122468 - 37122333
Alignment:
| Q |
118 |
ttttctattcaaaatgacttttcaatctgtcaacaacctatcattaataaattaagttgaagattcctgcatcagaagttaacacacttgtcaccaagca |
217 |
Q |
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| T |
37122468 |
ttttctattcaaaatgacttttcaatctgtcaacaacctatcattaataaattaagttgaagattcctgcatcagaagttaacacacttgtcaccaagca |
37122369 |
T |
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| Q |
218 |
tccaactcgaaagttaccaagaacactgaacaccaa |
253 |
Q |
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| T |
37122368 |
tccaactcgaaagttaccaagaacactgaacaccaa |
37122333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 37122575 - 37122486
Alignment:
| Q |
5 |
tgttgaatatacttgaataaattctttttagtaagaatgggaatatttcccttggcagagaaatatccagtgtctttctttgattcctca |
94 |
Q |
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| T |
37122575 |
tgttgaatatacttgaataaattgtttttagtaagaatgggaatatttcccttggcagagaaatatccagtgtctttctttgattcctca |
37122486 |
T |
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