View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_29 (Length: 438)

Name: NF9264A_low_29
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_29
NF9264A_low_29
[»] chr3 (1 HSPs)
chr3 (7-426)||(9816639-9817059)
[»] chr2 (3 HSPs)
chr2 (183-412)||(16944109-16944340)
chr2 (183-412)||(17014774-17015005)
chr2 (145-373)||(15490517-15490745)
[»] chr4 (2 HSPs)
chr4 (296-416)||(1831616-1831736)
chr4 (105-165)||(1831422-1831482)
[»] chr1 (2 HSPs)
chr1 (18-326)||(11753462-11753770)
chr1 (2-165)||(24645159-24645322)
[»] chr6 (1 HSPs)
chr6 (31-219)||(15566058-15566246)
[»] chr5 (1 HSPs)
chr5 (31-192)||(30064901-30065062)


Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 7 - 426
Target Start/End: Original strand, 9816639 - 9817059
Alignment:
Q  7 ttaaatagtccacttgattaactggtgtatgtctcacaacctcaagagttcaaagtaaaaggaaatgaatatatggtattcagattgcacaaagcaaagt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9816639 ttaaatagtccacttgattaactggtgtatgtctcacaacctcaagagttcaaagtaaaagaaaatgaatatatggtattcagattgcacaaagcaaagt 9816738  T
Q  107 atggtttgaagtatgctctaagagcctggaacaaaaggattgacaactttctagttcaagaagatttt-ttcaaatacaaagatgaaaatgttatgtatg 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9816739 atggtttgaagtatgctctaagagcctggaacaaaaggattgacaactttctagttcaagaagatttttttcaaatacaaagatgaaaatgttatgtatg 9816838  T
Q  206 tgaagaatagcaaatgctattatgtggtgtttatctatcaatatttcgatgatttagtggaaactgaaagcaatttatctgaggtagatgaattcaaaag 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9816839 tgaagaatagcaaatgctattatgtggtgtttatctatcaatattttgatgatttagtgaaaactgaaagcaatttatctgaggtagatgaattcaaaag 9816938  T
Q  306 acaaatgatgaaagagtttgacatgactggtttgggaagtttaacatatttctttggaatagaattcactaaaacctcaaagggattagtgatgcactag 405  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9816939 acaaatgatgaaagagtttgacatgactggtttgggaaggttaacatatttctttggaatagaattcactaaaacctcaaagggattagtgatgcactag 9817038  T
Q  406 aagaaatatgcaatagatatt 426  Q
    |||||||||||||||||||||    
T  9817039 aagaaatatgcaatagatatt 9817059  T

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Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 183 - 412
Target Start/End: Complemental strand, 16944340 - 16944109
Alignment:
Q  183 caaagatgaaaatgttatgtatgtgaagaatagcaaatgctattatgtggtgtttatctatcaatatttcgatgatttagtggaaactgaaagcaattta 282  Q
    ||||| |||| ||| | ||||| |||| |||| |||| | ||| || | ||| ||||||||| |||| | ||| ||||||||| ||||  ||||||||||    
T  16944340 caaagttgaatatggtctgtatttgaaaaataacaaaggttataatcttgtgcttatctatctatatgttgataatttagtggtaactagaagcaattta 16944241  T
Q  283 tctgaggtagat--gaattcaaaagacaaatgatgaaagagtttgacatgactggtttgggaagtttaacatatttctttggaatagaattcactaaaac 380  Q
     || || || |   |||||||||||||||||||||||||| || |||||||||  ||||||||  ||| |||| ||| ||||||||||||||||| ||||    
T  16944240 gcttagatatacaagaattcaaaagacaaatgatgaaagaattggacatgacttatttgggaaagttaccatacttccttggaatagaattcactgaaac 16944141  T
Q  381 ctcaaagggattagtgatgcactagaagaaat 412  Q
    |||||||||||||||||||||| |||||||||    
T  16944140 ctcaaagggattagtgatgcaccagaagaaat 16944109  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 183 - 412
Target Start/End: Complemental strand, 17015005 - 17014774
Alignment:
Q  183 caaagatgaaaatgttatgtatgtgaagaatagcaaatgctattatgtggtgtttatctatcaatatttcgatgatttagtggaaactgaaagcaattta 282  Q
    ||||| |||| ||| | ||||| |||| |||| |||| | ||| || | ||| ||||||||| |||| | ||| ||||||||| ||||  ||||||||||    
T  17015005 caaagttgaatatggtctgtatttgaaaaataacaaaggttataatcttgtgcttatctatctatatgttgataatttagtggtaactagaagcaattta 17014906  T
Q  283 tctgaggtagat--gaattcaaaagacaaatgatgaaagagtttgacatgactggtttgggaagtttaacatatttctttggaatagaattcactaaaac 380  Q
     || || || |   |||||||||||||||||||||||||| || |||||||||  ||||||||  ||| |||| ||| ||||||||||||||||| ||||    
T  17014905 gcttagatatacaagaattcaaaagacaaatgatgaaagaattggacatgacttatttgggaaagttaccatacttccttggaatagaattcactgaaac 17014806  T
Q  381 ctcaaagggattagtgatgcactagaagaaat 412  Q
    |||||||||||||||||||||| |||||||||    
T  17014805 ctcaaagggattagtgatgcaccagaagaaat 17014774  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 373
Target Start/End: Complemental strand, 15490745 - 15490517
Alignment:
Q  145 attgacaactttctagttcaagaagattttttcaaatacaaagatgaaaatgttatgtatgtgaagaatagcaaatgctattatgtggtgtttatctatc 244  Q
    ||||||||||||||||||||| | || ||| |||||| ||||| |||| ||  | ||||||||||||||| |||| |     || || || |||| | ||    
T  15490745 attgacaactttctagttcaataggaatttgtcaaatgcaaagttgaatattgtttgtatgtgaagaataacaaaggtagaaatctgatgcttatttgtc 15490646  T
Q  245 aatatttcgatgatttagtggaaactgaaagcaatttatctgaggtagatgaattcaaaagacaaatgatgaaagagtttgacatgactggtttgggaag 344  Q
     |||| | |||||||| |||| ||||| || |||| ||  ||||  ||| ||||||| |||||||||||||| ||| ||||| ||| ||| ||||||||     
T  15490645 tatatgttgatgatttcgtggtaactggaaccaatataattgagaaagaagaattcataagacaaatgatgagagaatttgatatggctgatttgggaaa 15490546  T
Q  345 tttaacatatttctttggaatagaattca 373  Q
     |||| ||| ||| ||| ||| |||||||    
T  15490545 gttaatatacttccttgaaatggaattca 15490517  T

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Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 296 - 416
Target Start/End: Original strand, 1831616 - 1831736
Alignment:
Q  296 aattcaaaagacaaatgatgaaagagtttgacatgactggtttgggaagtttaacatatttctttggaatagaattcactaaaacctcaaagggattagt 395  Q
    ||||||||||||||||||||| ||| ||||| ||||||| ||||||||  ||||||||||||  |||||| |||||||||||||| ||| |  | |||||    
T  1831616 aattcaaaagacaaatgatgacagaatttgagatgactgatttgggaaagttaacatatttccctggaatggaattcactaaaacttcagaatgtttagt 1831715  T
Q  396 gatgcactagaagaaatatgc 416  Q
    ||||||| |||||||||||||    
T  1831716 gatgcaccagaagaaatatgc 1831736  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 1831422 - 1831482
Alignment:
Q  105 gtatggtttgaagtatgctctaagagcctggaacaaaaggattgacaactttctagttcaa 165  Q
    |||||| |||||| | |||| |||||| |||||||||||||| | ||| ||||||||||||    
T  1831422 gtatggattgaagcaagctccaagagcatggaacaaaaggatggtcaagtttctagttcaa 1831482  T

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Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 11753770 - 11753462
Alignment:
Q  18 acttgattaactggtgtatgtctcacaacctcaagagttcaaagtaaaaggaaatgaatatatggtattcagattgcacaaagcaaagtatggtttgaag 117  Q
    ||||||| || ||||||||||| ||||||||| ||| |||||||| |||||||||||| ||||| |||||||| |||||||||     |  || ||||||    
T  11753770 acttgatgaagtggtgtatgtcacacaacctccagaattcaaagttaaaggaaatgaagatatgatattcagagtgcacaaagttttcttcggattgaag 11753671  T
Q  118 tatgctctaagagcctggaacaaaaggattgacaactttctagttcaagaagattttttcaaatacaaagatgaaaatgttatgtatgtgaag-aatagc 216  Q
     | | || |||||||| ||| |||| ||||||||||||| ||||| || |||| |||||||||| |||   |||| ||| | ||| ||  ||| || |      
T  11753670 caagttcaaagagcct-gaaaaaaatgattgacaactttatagttgaacaagaatttttcaaatgcaagtttgaatatggtgtgtctgaaaagaaaaaaa 11753572  T
Q  217 aaatgctattatgtggtgtttatctatcaatatttcgatgatttagtggaaactgaaagcaatttatctgaggtagatgaattcaaaagacaaatgatga 316  Q
    |||||  || || ||||| |||||| || |||| | ||| || ||||||  |||  |||||||||| ||||| ||||  ||||||||||||| |||||||    
T  11753571 aaatgtaatgatatggtgcttatctgtctatatgttgattatctagtggtcactagaagcaatttacctgagatagaataattcaaaagacagatgatga 11753472  T
Q  317 aagagtttga 326  Q
    ||||||||||    
T  11753471 aagagtttga 11753462  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 24645159 - 24645322
Alignment:
Q  2 catcattaaatagtccacttgattaactggtgtatgtctcacaacctcaagagttcaaagtaaaaggaaatgaatatatggtattcagattgcacaaagc 101  Q
    |||| |||||| | |||||| || || | ||||||||| ||||| ||| ||| ||||| ||  ||||||| |||||||||||||||||||| |||||  |    
T  24645159 catccttaaatggaccactttatgaagttgtgtatgtcacacaatctctagaattcaaggtttaaggaaaggaatatatggtattcagattacacaagac 24645258  T
Q  102 aaagtatggtttgaagtatgctctaagagcctggaacaaaaggattgacaactttctagttcaa 165  Q
    |  |||||     ||| | |||| ||||| ||| || |||| ||||||||||||||||||||||    
T  24645259 atcgtatgaaactaagcaagctcgaagagtctgaaataaaatgattgacaactttctagttcaa 24645322  T

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Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 31 - 219
Target Start/End: Complemental strand, 15566246 - 15566058
Alignment:
Q  31 gtgtatgtctcacaacctcaagagttcaaagtaaaaggaaatgaatatatggtattcagattgcacaaagcaaagtatggtttgaagtatgctctaagag 130  Q
    ||||||||| ||||||||| || ||||||||| |||| ||| ||| |||||| ||| ||||| || || ||    |||||||||||| | |||| |||||    
T  15566246 gtgtatgtcacacaacctctagggttcaaagtcaaagaaaaggaagatatggcatttagattacataaggctctatatggtttgaagcaagctccaagag 15566147  T
Q  131 cctggaacaaaaggattgacaactttctagttcaagaagattttttcaaatacaaagatgaaaatgttatgtatgtgaagaatagcaaa 219  Q
    ||||||| || ||||||||||||||||| || ||  || | ||| |||||| ||||| |||| ||| | | |||||||| |||||||||    
T  15566146 cctggaataagaggattgacaactttcttgtgcagcaatactttgtcaaatgcaaagctgaatatggtgtctatgtgaaaaatagcaaa 15566058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 192
Target Start/End: Original strand, 30064901 - 30065062
Alignment:
Q  31 gtgtatgtctcacaacctcaagagttcaaagtaaaaggaaatgaatatatggtattcagattgcacaaagcaaagtatggtttgaagtatgctctaagag 130  Q
    ||||||||| || |||||  || ||||||| | |||| ||||||| ||||| |||||||||| || || ||    |||||||||||| |  |||||||||    
T  30064901 gtgtatgtcacaaaacctgcagggttcaaattcaaagaaaatgaagatatgatattcagattacataaggctctatatggtttgaagcaatctctaagag 30065000  T
Q  131 cctggaacaaaaggattgacaactttctagttcaagaagattttttcaaatacaaagatgaa 192  Q
    | ||||| || ||||||| |||||||||||| ||  |||| ||| |||||| ||||| ||||    
T  30065001 catggaataagaggattgtcaactttctagtgcagcaagaatttgtcaaatgcaaagctgaa 30065062  T

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