View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9264A_low_290 (Length: 257)
Name: NF9264A_low_290
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_290 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 38566857 - 38567093
Alignment:
| Q |
21 |
atcttatttcttcaatcgttgctccatctttaccgtatgaaatgttatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaatttt |
120 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38566857 |
atcttatctcttcaatcgttgctccatctttaccatatgaaatgttatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaatttt |
38566956 |
T |
|
| Q |
121 |
ccctctgatccacctgacctgaaattctttcatgttaattccatcgataagaacttcacctgcctgtggatcatagaatctctctaccaaattgataatt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38566957 |
ccctctgatccacctgacctgaaattctttcatgttaattccatcgataagaacttcacctgcctgtggatcatagaatctctctaccaaactgataatt |
38567056 |
T |
|
| Q |
221 |
gtcgactttccacttccactttgtccaaccaatgctg |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38567057 |
gtcgactttccacttccactttgtccaaccaatgctg |
38567093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 21 - 255
Target Start/End: Original strand, 38525732 - 38525966
Alignment:
| Q |
21 |
atcttatttcttcaatcgttgctccatctttaccgtatgaaatgttatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaatttt |
120 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
38525732 |
atcttatttcttcaattgttgctccatctttaccatatgcaatgttatccttaatgctggatgcaaataacactggctcctggctgacaagaccaatttt |
38525831 |
T |
|
| Q |
121 |
ccctctgatccacctgacctgaaattctttcatgttaattccatcgataagaacttcacctgcctgtggatcatagaatctctctaccaaattgataatt |
220 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| | |||| | |
|
|
| T |
38525832 |
ccctctgatccacctaagctgaagttctttcatgttaattccatcgataagtacttcaccggcctgtggatcatagaatctttctaccaaactaataact |
38525931 |
T |
|
| Q |
221 |
gtcgactttccacttccactttgtccaaccaatgc |
255 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |
|
|
| T |
38525932 |
gtggactttccacttccactttgtccaaccaatgc |
38525966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 51199554 - 51199472
Alignment:
| Q |
170 |
agaacttcacctgcctgtggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaa |
252 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||| |||| ||| || ||| || |||||||| |||||||| || ||||| |
|
|
| T |
51199554 |
agaacttcaccagcctgtggatcataaaatctctctatcaaactgacaactgtggattttccactcccactttgccctaccaa |
51199472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 51212687 - 51212627
Alignment:
| Q |
183 |
cctgtggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttg |
243 |
Q |
| |
|
||||||||||||| |||||||||| |||||| || | ||| || |||||||| |||||||| |
|
|
| T |
51212687 |
cctgtggatcataaaatctctctatcaaatttatcactgttgattttccactcccactttg |
51212627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 252
Target Start/End: Original strand, 49737314 - 49737396
Alignment:
| Q |
170 |
agaacttcacctgcctgtggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaa |
252 |
Q |
| |
|
|||| |||||| ||||||||||||| |||||||||| |||| | |||| ||||| || ||||| ||||||||||| ||||| |
|
|
| T |
49737314 |
agaatttcaccaccctgtggatcataaaatctctctatcaaactaataaccgtcgatttcccactcccactttgtcctaccaa |
49737396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University