View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_292 (Length: 257)

Name: NF9264A_low_292
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_292
NF9264A_low_292
[»] chr5 (7 HSPs)
chr5 (1-257)||(29013076-29013333)
chr5 (51-256)||(29365815-29366020)
chr5 (20-179)||(24085110-24085269)
chr5 (6-101)||(29014953-29015048)
chr5 (35-91)||(11095406-11095462)
chr5 (34-84)||(10391444-10391494)
chr5 (37-77)||(34117473-34117513)
[»] chr6 (1 HSPs)
chr6 (34-88)||(10016725-10016779)
[»] chr4 (2 HSPs)
chr4 (32-83)||(24193632-24193683)
chr4 (34-87)||(28615436-28615489)
[»] chr2 (3 HSPs)
chr2 (34-84)||(41809163-41809213)
chr2 (35-83)||(787435-787483)
chr2 (34-90)||(6547991-6548047)
[»] chr7 (1 HSPs)
chr7 (34-87)||(529464-529517)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 29013076 - 29013333
Alignment:
Q  1 atcgagtttggtgtttgtattcgtacttcataactcacaagtgtttatgccagcagataagcttcaataatccaatccaaacagaccttaaactttcaat 100  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  29013076 atcgtgtttggtgtttgtgttcgtacttcataactcacaagtgtttatgccagcagataagcttcaataatccaatccaaacagaccttaaactttaaat 29013175  T
Q  101 caaagttttcaacttttccactaaataattgaacccaatagatcatattgaataaaaacctcactcacgtaagagaaacnnnnnnncaagctacaaaaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  29013176 caaagttttcaacttttccactaaataattgaacccaatagagcatattgaataaaaacctcactcacgtaagagaaacaaaaaaacaagctacaaaaag 29013275  T
Q  201 aaaca-tttttccataatctatatgaaagttatgaaccaacaatttacaatacctgag 257  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29013276 aaacattttttccataatctatatgaaagttatgaaccaacaatttacaatacctgag 29013333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 51 - 256
Target Start/End: Original strand, 29365815 - 29366020
Alignment:
Q  51 cagcagataagcttcaataatccaatccaaacagaccttaaactttcaatcaaagttttcaacttttccactaaataattgaacccaatagatcatattg 150  Q
    |||||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||| |||||||    
T  29365815 cagcagataagcctcaataatccaatccaaatggaccttaaactt-caatcaaagttttcaatttttccactaaatagttgaacccaatagagcatattg 29365913  T
Q  151 aataaaaacctcactcacgtaagagaaacnnnnnnncaagctacaaaaagaaacattttt-ccataatctatatgaaagttatgaaccaacaatttacaa 249  Q
    ||||||||| |||||||| | ||||||||       |||||||||||||||||||||||| |||||||||||||||| |||||||| |||  ||||||||    
T  29365914 aataaaaacttcactcacatgagagaaacaaaaaaacaagctacaaaaagaaacatttttcccataatctatatgaaggttatgaatcaaacatttacaa 29366013  T
Q  250 tacctga 256  Q
    |||||||    
T  29366014 tacctga 29366020  T

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Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 24085110 - 24085269
Alignment:
Q  20 ttcgtacttcataactcacaagtgtttatgccagcagataagcttcaataatccaatccaaacagaccttaaactttcaatcaaagttttcaacttttcc 119  Q
    ||||| ||||| |||||||||||||||||| |||  | |||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||     
T  24085110 ttcgtgcttcaaaactcacaagtgtttatgtcagtcggtaagcttctataatccaatccaaacagaccttaaactttcaatccacgttttcaacttttct 24085209  T
Q  120 actaaataattgaacccaatagatcatattgaataaaaacctcactcacgtaagagaaac 179  Q
    || |||||||||||||||||| |  | | ||||| ||||||||| |||| ||||||||||    
T  24085210 acaaaataattgaacccaatatagtaaactgaattaaaacctcagtcacataagagaaac 24085269  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 29014953 - 29015048
Alignment:
Q  6 gtttggtgtttgtattcgtacttcataactcacaagtgtttatgccagcagataagcttcaataatccaatccaaacagaccttaaactttcaatc 101  Q
    ||||||||| ||  ||||| ||||| |||||| ||||||||||| |||| | |||||||| |||||||||||||||| | ||||||||||||||||    
T  29014953 gtttggtgtctgggttcgtgcttcagaactcagaagtgtttatgtcagccggtaagcttctataatccaatccaaacgggccttaaactttcaatc 29015048  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 11095462 - 11095406
Alignment:
Q  35 tcacaagtgtttatgccagcagataagcttcaataatccaatccaaacagaccttaa 91  Q
    ||||||||||||||| ||| |||||||||| ||||| ||| ||||||||||||||||    
T  11095462 tcacaagtgtttatgtcagtagataagcttaaataaaccagtccaaacagaccttaa 11095406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 10391444 - 10391494
Alignment:
Q  34 ctcacaagtgtttatgccagcagataagcttcaataatccaatccaaacag 84  Q
    |||||||||| |||||||||||||||||||| ||||| |||||| ||||||    
T  10391444 ctcacaagtgattatgccagcagataagcttaaataagccaatcgaaacag 10391494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 34117513 - 34117473
Alignment:
Q  37 acaagtgtttatgccagcagataagcttcaataatccaatc 77  Q
    ||||||||||||||||| ||||||||| |||||| ||||||    
T  34117513 acaagtgtttatgccagtagataagctccaataagccaatc 34117473  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 10016725 - 10016779
Alignment:
Q  34 ctcacaagtgtttatgccagcagataagcttcaataatccaatccaaacagacct 88  Q
    |||||||||||||||||| | |||||||||  ||||| |||||||||||||||||    
T  10016725 ctcacaagtgtttatgcctgtagataagctcaaataaaccaatccaaacagacct 10016779  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 24193632 - 24193683
Alignment:
Q  32 aactcacaagtgtttatgccagcagataagcttcaataatccaatccaaaca 83  Q
    |||||||||||||||||||||| |||||||||  |||||  |||||||||||    
T  24193632 aactcacaagtgtttatgccaggagataagctcaaataagtcaatccaaaca 24193683  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 28615436 - 28615489
Alignment:
Q  34 ctcacaagtgtttatgccagcagataagcttcaataatccaatccaaacagacc 87  Q
    ||||||||||||||||| || |||||| ||| |||||  |||||||||||||||    
T  28615436 ctcacaagtgtttatgctagtagataaacttaaataagtcaatccaaacagacc 28615489  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 41809213 - 41809163
Alignment:
Q  34 ctcacaagtgtttatgccagcagataagcttcaataatccaatccaaacag 84  Q
    ||||||||||||||||||| || |||||||| || || |||||||||||||    
T  41809213 ctcacaagtgtttatgccaacaaataagctttaaaaaaccaatccaaacag 41809163  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 787435 - 787483
Alignment:
Q  35 tcacaagtgtttatgccagcagataagcttcaataatccaatccaaaca 83  Q
    ||||||||| ||||||||| ||||| |||  ||||||||||||||||||    
T  787435 tcacaagtgcttatgccagtagatatgctcgaataatccaatccaaaca 787483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 6547991 - 6548047
Alignment:
Q  34 ctcacaagtgtttatgccagcagataagcttcaataatccaatccaaacagacctta 90  Q
    |||||||||  |||||| || |||||||||| |||||  ||||||||||||||||||    
T  6547991 ctcacaagttcttatgctagtagataagcttgaataagtcaatccaaacagacctta 6548047  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 529464 - 529517
Alignment:
Q  34 ctcacaagtgtttatgccagcagataagcttcaataatccaatccaaacagacc 87  Q
    |||||||||||||||||||| |||||||||  |||||  |||||||| ||||||    
T  529464 ctcacaagtgtttatgccagtagataagctcaaataagtcaatccaatcagacc 529517  T

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