View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_300 (Length: 255)

Name: NF9264A_low_300
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_300
NF9264A_low_300
[»] chr2 (7 HSPs)
chr2 (1-255)||(2327198-2327452)
chr2 (2-247)||(2321346-2321591)
chr2 (1-255)||(2294030-2294284)
chr2 (2-236)||(2303644-2303878)
chr2 (1-234)||(2310361-2310594)
chr2 (1-214)||(2330913-2331126)
chr2 (2-255)||(2351220-2351473)
[»] chr8 (2 HSPs)
chr8 (10-253)||(41127234-41127480)
chr8 (84-200)||(26494893-26495009)
[»] chr4 (1 HSPs)
chr4 (67-114)||(55017070-55017117)
[»] chr5 (1 HSPs)
chr5 (78-199)||(15176287-15176408)


Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 2327198 - 2327452
Alignment:
Q  1 tggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327198 tggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgat 2327297  T
Q  101 gccgtttggagctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaag 200  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327298 gccgtttggagctggtaggagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaag 2327397  T
Q  201 gttccagagggtggccatgtcgatttgtcggaaaaatttgaattcaccgtggtga 255  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2327398 gttccggagggtggccatgtcgatttgtcagaaaaatttgaattcaccgtggtga 2327452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 2 - 247
Target Start/End: Original strand, 2321346 - 2321591
Alignment:
Q  2 ggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgatg 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  2321346 ggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattatagggagtaaagagataaagatgatg 2321445  T
Q  102 ccgtttggagctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaagg 201  Q
    |||||||||||||  || ||||||||||| |||  |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||| ||     
T  2321446 ccgtttggagctggaaggagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggtttggaatttcaattggcagc 2321545  T
Q  202 ttccagagggtggccatgtcgatttgtcggaaaaatttgaattcac 247  Q
    |||| |||||||||||||| |||||||||||||||  |||||||||    
T  2321546 ttccggagggtggccatgttgatttgtcggaaaaagatgaattcac 2321591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 2294030 - 2294284
Alignment:
Q  1 tggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgat 100  Q
    |||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||    
T  2294030 tggatcctcgtgtttgggaggacccgttggagtttaagccagaaaggtttttgaaggatgagacttttgacattacaggaagtaaagagataaagatgat 2294129  T
Q  101 gccgtttggagctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaag 200  Q
    ||||||||||||||  |||||||||||||| |||  |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2294130 gccgtttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggtttggaatttcgattggaag 2294229  T
Q  201 gttccagagggtggccatgtcgatttgtcggaaaaatttgaattcaccgtggtga 255  Q
    ||||||||||| || ||||| |||||| |||||| |   ||||||||| ||||||    
T  2294230 gttccagagggcgggcatgttgatttgacggaaatacaagaattcaccatggtga 2294284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 2 - 236
Target Start/End: Original strand, 2303644 - 2303878
Alignment:
Q  2 ggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgatg 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||| ||||| |||||||||    
T  2303644 ggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggttttggaaggatgagaattttgacattacagggagtaaggagataaagatgatg 2303743  T
Q  102 ccgtttggagctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaagg 201  Q
    ||||||| |||||| || ||||||||||| | |  |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  2303744 ccgtttgaagctgaaaggagaatttgtcctgcacttaatttagctttgctccatttagaatattttgtggctaatttggtttggaatttcgattggaagc 2303843  T
Q  202 ttccagagggtggccatgtcgatttgtcggaaaaa 236  Q
    |||||||||| ||| |||| |||||||||||||||    
T  2303844 ttccagagggcggctatgttgatttgtcggaaaaa 2303878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 2310361 - 2310594
Alignment:
Q  1 tggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgat 100  Q
    |||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||  ||| |||| ||||||||||| ||||||||    
T  2310361 tggatcgtcgtgtttgggaggacccattggagtttaagccagaaaggtttttgaaggatgagacttttgtcattccaggaagtaaagagataaagatgat 2310460  T
Q  101 gccgtttggagctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaag 200  Q
    ||||||||||||||  |||||||||||||| |||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2310461 gccgtttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaatttggtttggaatttcgattggaag 2310560  T
Q  201 gttccagagggtggccatgtcgatttgtcggaaa 234  Q
    ||||||||||| || ||||| |||||| ||||||    
T  2310561 gttccagagggcgggcatgttgatttgacggaaa 2310594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 2330913 - 2331126
Alignment:
Q  1 tggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgat 100  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||    
T  2330913 tggaccctcgtgtttgggaggatccaatggaatttaagccagaaaggtttttgaaggatgagacttttgacattacaggaagtaaagagataaagatgat 2331012  T
Q  101 gccgtttggagctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaag 200  Q
    ||| ||||||||||  || ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2331013 gccatttggagctgggaggagaatttgtcctggatataatttagctttgcttcatttggaatattttgtggctaatttggtttggaatttcgattggaag 2331112  T
Q  201 gttccagagggtgg 214  Q
    ||||| ||||||||    
T  2331113 gttcccgagggtgg 2331126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 2 - 255
Target Start/End: Original strand, 2351220 - 2351473
Alignment:
Q  2 ggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgatg 101  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||| |||||||||||||| |||||||||    
T  2351220 ggatcctcgtgtttgggaggatccaatggagtttaagccagagaggtttttgaaggatgaaacatttgacattacggggagtaaagagataaagatgatg 2351319  T
Q  102 ccgtttggagctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaagg 201  Q
    || ||||| | || ||| ||||| ||||| ||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||    
T  2351320 ccatttggtgttggtaggagaatctgtcccggatataatttagctttgcttcacttggaatattttgtggctaatttggtttggaatttcgattggaagg 2351419  T
Q  202 ttccagagggtggccatgtcgatttgtcggaaaaatttgaattcaccgtggtga 255  Q
    ||||||| ||||| ||||| |||||||||||||||   |||||||| |||||||    
T  2351420 ttccagaaggtgggcatgttgatttgtcggaaaaacaagaattcactgtggtga 2351473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 41127234 - 41127480
Alignment:
Q  10 gtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgatgccgtttgg 109  Q
    |||||||||| |||||| |||||||||| |||||||||||||||||||||||| ||||||||||||| |||| ||||||||| |||||||||||||||||    
T  41127234 gtgtttgggaagatccattggagtttaaaccagaaaggtttttgaaggatgaggcttttgatattaccgggactaaagagataaagatgatgccgtttgg 41127333  T
Q  110 agctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagag 209  Q
    || ||  || ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||  |||||||| ||| ||||    
T  41127334 agttgggaggagaatttgtcctggatataatttagctttgctccatttggaatactttgtggctaatttggtctggaattttaattggaagattctagag 41127433  T
Q  210 gg---tggccatgtcgatttgtcggaaaaatttgaattcaccgtggt 253  Q
    ||   |||  |||| |||||||||||||||  |||||||||||||||    
T  41127434 ggagctggttatgttgatttgtcggaaaaaactgaattcaccgtggt 41127480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 200
Target Start/End: Original strand, 26494893 - 26495009
Alignment:
Q  84 aaagagatcaagatgatgccgtttggagctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggttt 183  Q
    |||||||| |||||||||||||||||||| |  || || |||||||| |  ||||| || ||  | |||||||| ||||| ||||| |||||||||||||    
T  26494893 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 26494992  T
Q  184 ggaatttcgattggaag 200  Q
     ||| || || ||||||    
T  26494993 tgaactttgagtggaag 26495009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 55017070 - 55017117
Alignment:
Q  67 ttgatattacagggagtaaagagatcaagatgatgccgtttggagctg 114  Q
    ||||||||||||| | ||||||||| ||||||||||||||||| ||||    
T  55017070 ttgatattacaggaactaaagagatgaagatgatgccgtttggtgctg 55017117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 199
Target Start/End: Complemental strand, 15176408 - 15176287
Alignment:
Q  78 gggagtaaagagatcaagatgatgccgtttggagctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatt 177  Q
    |||||||||||||| ||||||||||| |||||||| |  || ||||| ||||| || |||  |||||| ||  | || |||||||| ||||| || ||||    
T  15176408 gggagtaaagagataaagatgatgccatttggagcagggaggagaatgtgtcctggctatggtttagcattgttgcacttggaatactttgttgccaatt 15176309  T
Q  178 tggtttggaatttcgattggaa 199  Q
    | |||| |||||| || |||||    
T  15176308 ttgttttgaattttgagtggaa 15176287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University