View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_31 (Length: 435)

Name: NF9264A_low_31
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_31
NF9264A_low_31
[»] chr4 (3 HSPs)
chr4 (102-430)||(13130164-13130492)
chr4 (104-186)||(12609371-12609452)
chr4 (287-349)||(40117938-40118000)
[»] chr3 (6 HSPs)
chr3 (180-391)||(13592179-13592390)
chr3 (198-390)||(8772044-8772236)
chr3 (184-325)||(19165750-19165891)
chr3 (233-375)||(19577683-19577825)
chr3 (115-169)||(19577836-19577889)
chr3 (115-148)||(8772013-8772046)
[»] chr1 (1 HSPs)
chr1 (115-366)||(18828843-18829093)
[»] chr7 (5 HSPs)
chr7 (154-393)||(20580899-20581138)
chr7 (211-365)||(13251116-13251270)
chr7 (115-188)||(19202934-19203006)
chr7 (193-310)||(22523381-22523499)
chr7 (116-172)||(1586983-1587038)
[»] chr2 (5 HSPs)
chr2 (161-375)||(25533676-25533890)
chr2 (244-376)||(32442530-32442662)
chr2 (115-171)||(16816206-16816261)
chr2 (115-171)||(16855363-16855418)
chr2 (115-187)||(28923007-28923078)
[»] chr8 (4 HSPs)
chr8 (103-188)||(24720857-24720941)
chr8 (115-188)||(26828280-26828352)
chr8 (126-188)||(14998308-14998369)
chr8 (115-188)||(25232132-25232204)
[»] chr6 (3 HSPs)
chr6 (231-303)||(28587366-28587438)
chr6 (248-324)||(12973408-12973485)
chr6 (115-188)||(21842993-21843065)
[»] chr5 (3 HSPs)
chr5 (115-176)||(25404972-25405032)
chr5 (115-187)||(19054586-19054657)
chr5 (116-187)||(16783291-16783361)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 102 - 430
Target Start/End: Complemental strand, 13130492 - 13130164
Alignment:
Q  102 gataatggatcgtctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatccaacgcttcttttgcgtcttgagcccg 201  Q
    |||||||| ||  |||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||    
T  13130492 gataatgggtcacctcccattcagcgtttgtttaacgtctgagtccccgacgatcaataggttacctcctacccaacacttcttttacgtcttgagcccg 13130393  T
Q  202 acggttcccatgggttgcctcccatgcaacacttcattttatgtttattagctcgacgcctcgatcctcttagggttgcttgtatgaaagaaagaacaca 301  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13130392 acggttcccatggattgcctcccatgcaacacttcattttacgtttattagctcgacgcctcgatcctcttagggtggcttgtatgaaagaaagaacaca 13130293  T
Q  302 tcatccttcatctttctcttgttcaaaaggaactccatgaatttggcaaggagaagtaagtgttcacatgctcccatcataaggatttcagagtatgtgc 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13130292 tcatccttcatctttctcttgttcaaaaggaactccatgaatttggcaaggagaagtaagtgttcacatgctcccatcataaggatttcagggtatgtgc 13130193  T
Q  402 ttgtcctccttatggaacaccaagactct 430  Q
    |||||||||||| ||||||||||||||||    
T  13130192 ttgtcctccttacggaacaccaagactct 13130164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 12609371 - 12609452
Alignment:
Q  104 taatggatcgtctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatccaacgcttcttt 186  Q
    |||||||||| ||||||||||||||||| ||||||||||||| | ||||| ||||||||||  |||||||| | |||||||||    
T  12609371 taatggatcgcctcccattcaacgcttggttaacgtctgagt-ctcgacggtcaataggttgtctcctatcaagcgcttcttt 12609452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 349
Target Start/End: Original strand, 40117938 - 40118000
Alignment:
Q  287 gaaagaaagaacacatcatccttcatctttctcttgttcaaaaggaactccatgaatttggca 349  Q
    ||||||||||||||||| |||||| | || |||||||| || ||||| |||||||||||||||    
T  40117938 gaaagaaagaacacatcctccttccttttcctcttgtttaacaggaattccatgaatttggca 40118000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 180 - 391
Target Start/End: Original strand, 13592179 - 13592390
Alignment:
Q  180 cttcttttgcgtcttgagcccgacggttcccatgggttgcctcccatgcaacacttcattttatgtttattagctcgacgcctcgatcctcttagggttg 279  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||| | || |||||||| ||||||| |||||| ||||||| |    
T  13592179 cttcttttacgtcttgagcccaacggttcccatgggttgcctcccatgcaatacttcatttgacgtctattagcttgacgccttgatcctgttagggtgg 13592278  T
Q  280 cttgtatgaaagaaagaacacatcatccttcatctttctcttgttcaaaaggaactccatgaatttggcaaggagaagtaagtgttcacatgctcccatc 379  Q
    | | ||||||||||||||||||||||||| | | ||||||||||||  ||||||||||||||||||||||  |||  ||||||||| |||| |||| |||    
T  13592279 cctatatgaaagaaagaacacatcatcctccctttttctcttgttcggaaggaactccatgaatttggcatagagtggtaagtgttaacatcctcctatc 13592378  T
Q  380 ataaggatttca 391  Q
    | ||||||||||    
T  13592379 aaaaggatttca 13592390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 198 - 390
Target Start/End: Original strand, 8772044 - 8772236
Alignment:
Q  198 cccgacggttcccatgggttgcctcccatgcaacacttcattttatgtttattagctcgacgcctcgatcctcttagggttgcttgtatgaaagaaagaa 297  Q
    ||||| ||||||||||| |||||||||||||| | ||| || | |   |||||||||| ||||||| ||||| ||||||| |||| ||  ||||||||||    
T  8772044 cccgaaggttcccatggattgcctcccatgcagcgctttatataacaattattagctcaacgcctcaatcctgttagggtggcttatacaaaagaaagaa 8772143  T
Q  298 cacatcatccttcatctttctcttgttcaaaaggaactccatgaatttggcaaggagaagtaagtgttcacatgctcccatcataaggatttc 390  Q
    ||||||||| ||| |||||||||||||   |||||||||||||| |||||||  |||  ||||||||||||||||||||||||  ||||||||    
T  8772144 cacatcatctttcctctttctcttgtttggaaggaactccatgagtttggcatagagtggtaagtgttcacatgctcccatcagtaggatttc 8772236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 184 - 325
Target Start/End: Complemental strand, 19165891 - 19165750
Alignment:
Q  184 ttttgcgtcttgagcccgacggttcccatgggttgcctcccatgcaacacttcattttatgtttattagctcgacgcctcgatcctcttagggttgcttg 283  Q
    |||| ||||||||||| ||  ||||||||||||||||||||||||| | |||||||| | || ||||||||||||| |||  |||| ||||| |  | ||    
T  19165891 ttttacgtcttgagcctgatagttcccatgggttgcctcccatgcagcgcttcatttaacgtctattagctcgacgactcagtcctgttaggctgacatg 19165792  T
Q  284 tatgaaagaaagaacacatcatccttcatctttctcttgttc 325  Q
    ||| ||||||||||||||||||||||| |  |||||||||||    
T  19165791 tataaaagaaagaacacatcatccttccttcttctcttgttc 19165750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 233 - 375
Target Start/End: Complemental strand, 19577825 - 19577683
Alignment:
Q  233 cttcattttatgtttattagctcgacgcctcgatcctcttagggttgcttgtatgaaagaaagaacacatcatccttcatctttctcttgttcaaaagga 332  Q
    |||||||| | || ||||||||||||||| | ||||| ||||||| ||||  |||||||||||||||||  ||||||| |||||||||||||    ||||    
T  19577825 cttcatttaacgtctattagctcgacgccccaatcctgttagggtggcttaaatgaaagaaagaacacacaatccttcttctttctcttgttagggagga 19577726  T
Q  333 actccatgaatttggcaaggagaagtaagtgttcacatgctcc 375  Q
    |||||||||| ||   ||| |||| ||||||||| ||||||||    
T  19577725 actccatgaactttttaagaagaattaagtgttcccatgctcc 19577683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 19577889 - 19577836
Alignment:
Q  115 ctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctc 169  Q
    |||||||||| |||||||||||||||||||| || |||| |||||||||| ||||    
T  19577889 ctcccattcagcgcttgtttaacgtctgagt-ccagacggtcaataggttgcctc 19577836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 8772013 - 8772046
Alignment:
Q  115 ctcccattcaacgcttgtttaacgtctgagtccc 148  Q
    ||||||||||||||||||||||| ||||||||||    
T  8772013 ctcccattcaacgcttgtttaacatctgagtccc 8772046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 115 - 366
Target Start/End: Original strand, 18828843 - 18829093
Alignment:
Q  115 ctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatccaacgcttcttttgcgtcttgagcccgacggttcccatgg 214  Q
    |||||||||| |||||||||||||||||| ||||  ||  |||||||||| |||||||| || |||||||||| |||||| || | |||||||||||| |    
T  18828843 ctcccattcagcgcttgtttaacgtctgattccca-actctcaataggttgcctcctattcagcgcttcttttacgtcttaagtctgacggttcccatag 18828941  T
Q  215 gttgcctcccatgcaacacttcattttatgtttattagctcgacgcctcgatcctcttagggttgcttgtatgaaagaaagaacacatcatccttcatct 314  Q
    ||||||||||||||  | |||||||| | || ||||| || |||||||||||||| ||||||| |||| ||||||||||| ||||||||| ||||| |||    
T  18828942 gttgcctcccatgcggcgcttcatttaacgtctattatcttgacgcctcgatcctgttagggtggcttatatgaaagaaataacacatcacccttcctct 18829041  T
Q  315 ttctcttgttcaaaaggaactccatgaatttggcaaggagaagtaagtgttc 366  Q
    |||||||||||  ||||||||||||||| || | |||||||| |||||||||    
T  18829042 ttctcttgttccgaaggaactccatgaactttgtaaggagaattaagtgttc 18829093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 154 - 393
Target Start/End: Original strand, 20580899 - 20581138
Alignment:
Q  154 atcaataggttacctcctatccaacgcttcttttgcgtcttgagcccgacggttcccatgggttgcctcccatgcaacacttcattttatgtttattagc 253  Q
    ||||||||||| | |||||  || |||||||||| ||| |||| ||||| |||| |||||||||| | |||||||| | || ||||| | || |||||||    
T  20580899 atcaataggttgcatcctactcagcgcttcttttacgtattgatcccgatggtttccatgggttgtcgcccatgcatcgctccatttaacgtctattagc 20580998  T
Q  254 tcgacgcctcgatcctcttagggttgcttgtatgaaagaaagaacacatcatccttcatctttctcttgttcaaaaggaactccatgaatttggcaagga 353  Q
    ||||| ||| |||| ||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||  ||||||||||||||||||| ||  ||    
T  20580999 tcgaccccttgatcatcttagggtggcctgtatgaaagaaagaacacatcaaccttcctctttctcttgttcggaaggaactccatgaatttgacataga 20581098  T
Q  354 gaagtaagtgttcacatgctcccatcataaggatttcaga 393  Q
    |  |||||||||||||| || |||||| ||||||||||||    
T  20581099 gtggtaagtgttcacatccttccatcaaaaggatttcaga 20581138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 211 - 365
Target Start/End: Complemental strand, 13251270 - 13251116
Alignment:
Q  211 atgggttgcctcccatgcaacacttcattttatgtttattagctcgacgcctcgatcctcttagggttgcttgtatgaaagaaagaacacatcatccttc 310  Q
    ||||||||||||||||||| | |||||||| | || |||||||||||| |||||||||| ||| ||| |||| ||||||| |||||||||||||||||||    
T  13251270 atgggttgcctcccatgcagcgcttcatttaacgtctattagctcgacacctcgatcctattacggtggcttatatgaaataaagaacacatcatccttc 13251171  T
Q  311 atctttctcttgttcaaaaggaactccatgaatttggcaaggagaagtaagtgtt 365  Q
     |||||||||||||   |||||||||||||||||| |||||||||| ||||||||    
T  13251170 ctctttctcttgtttggaaggaactccatgaattttgcaaggagaattaagtgtt 13251116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 19202934 - 19203006
Alignment:
Q  115 ctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatccaacgcttcttttg 188  Q
    |||||||||| |||||||||||||||||||| ||||||| |||||||||| |||||||| | ||||||||||||    
T  19202934 ctcccattcagcgcttgtttaacgtctgagt-cccgacggtcaataggttgcctcctattcgacgcttcttttg 19203006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 193 - 310
Target Start/End: Complemental strand, 22523499 - 22523381
Alignment:
Q  193 ttgagcccgacggttcccatgggttgcctcccatgcaacacttcattttatgtttattagctcgacgcctcgatc-ctcttagggttgcttgtatgaaag 291  Q
    ||||||| ||||| || ||||||||||||||||||||||||||  ||| | || |||||| | | |||||| | | || ||||||| |||||||||||||    
T  22523499 ttgagcctgacggatctcatgggttgcctcccatgcaacactttgtttaacgtctattagtttgtcgcctcaaccactgttagggtggcttgtatgaaag 22523400  T
Q  292 aaagaacacatcatccttc 310  Q
    ||| |||| ||| ||||||    
T  22523399 aaataacatatcctccttc 22523381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 1586983 - 1587038
Alignment:
Q  116 tcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctccta 172  Q
    ||||||||| |||||||||||||||| ||| |||||||||||||||||| |||||||    
T  1586983 tcccattcagcgcttgtttaacgtctcagt-cccgacgatcaataggttgcctccta 1587038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 161 - 375
Target Start/End: Original strand, 25533676 - 25533890
Alignment:
Q  161 ggttacctcctatccaacgcttcttttgcgtcttgagcccgacggttcccatgggttgcctcccatgcaacacttcattttatgtttattagctcgacgc 260  Q
    |||| ||||| || || |||||||||| ||||||||| | ||| | |||||| |||||||||||||||| | |||||||| | || |||||||| |||||    
T  25533676 ggttgcctcccattcagcgcttcttttacgtcttgagtctgacaggtcccataggttgcctcccatgcagcgcttcatttaacgtctattagcttgacgc 25533775  T
Q  261 ctcgatcctcttagggttgcttgtatgaaagaaagaacacatcatccttcatctttctcttgttcaaaaggaactccatgaatttggcaaggagaagtaa 360  Q
    || |||||| ||||||| |||| ||||||||||||||||||||||||||| |||||||||||||   |||||||| |||||| || | ||| |||| |||    
T  25533776 cttgatcctgttagggtggcttatatgaaagaaagaacacatcatccttcttctttctcttgttaggaaggaacttcatgaactttgtaagaagaattaa 25533875  T
Q  361 gtgttcacatgctcc 375  Q
    |||||| ||||||||    
T  25533876 gtgttcccatgctcc 25533890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 244 - 376
Target Start/End: Complemental strand, 32442662 - 32442530
Alignment:
Q  244 gtttattagctcgacgcctcgatcctcttagggttgcttgtatgaaagaaagaacacatcatccttcatcttt-ctcttgttcaaaaggaactccatgaa 342  Q
    |||| ||||||||||||||| | ||| ||||||| |||||||||||||||||||||||||||||||| ||||| || |||||   |||||  ||||||||    
T  32442662 gtttgttagctcgacgcctcaaccctattagggtggcttgtatgaaagaaagaacacatcatccttc-tctttcctgttgtttggaaggatgtccatgaa 32442564  T
Q  343 tttggcaaggagaagtaagtgttcacatgctccc 376  Q
    |||||||  ||||  |||||||||||||||||||    
T  32442563 tttggcatagagatataagtgttcacatgctccc 32442530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 16816206 - 16816261
Alignment:
Q  115 ctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcct 171  Q
    |||||||||| |||||||||||||||| ||| ||||| |||||||||||| ||||||    
T  16816206 ctcccattcagcgcttgtttaacgtcttagt-cccgatgatcaataggtttcctcct 16816261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 16855363 - 16855418
Alignment:
Q  115 ctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcct 171  Q
    |||||||||| |||||||||||||||| ||| ||||| |||||||||||| ||||||    
T  16855363 ctcccattcagcgcttgtttaacgtcttagt-cccgatgatcaataggtttcctcct 16855418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 187
Target Start/End: Original strand, 28923007 - 28923078
Alignment:
Q  115 ctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatccaacgcttctttt 187  Q
    ||||||||||  | ||||||||||||||||| ||||||||| |||||||  |||||||| || | ||||||||    
T  28923007 ctcccattcagtgtttgtttaacgtctgagt-cccgacgattaataggtggcctcctattcatcacttctttt 28923078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 24720941 - 24720857
Alignment:
Q  103 ataatggatcgtctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatccaacgcttcttttg 188  Q
    ||||||| | |||||| ||| | ||||||||||||||||||||||| |||| |||||| ||| |||||||| ||||||||||||||    
T  24720941 ataatgggttgtctcctattaagcgcttgtttaacgtctgagtccc-gacggtcaataagttgcctcctattcaacgcttcttttg 24720857  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 26828352 - 26828280
Alignment:
Q  115 ctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatccaacgcttcttttg 188  Q
    ||||||||||||||||||||||||| ||||| || |||| |||||||||| ||||||||  |||||||||||||    
T  26828352 ctcccattcaacgcttgtttaacgtatgagt-cctgacggtcaataggttgcctcctatttaacgcttcttttg 26828280  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 14998308 - 14998369
Alignment:
Q  126 cgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatccaacgcttcttttg 188  Q
    |||||||||||||||||| | ||||||| ||||||||||  ||||||| |||| |||||||||    
T  14998308 cgcttgtttaacgtctga-ttcccgacggtcaataggttgtctcctattcaacacttcttttg 14998369  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 25232132 - 25232204
Alignment:
Q  115 ctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatccaacgcttcttttg 188  Q
    |||||||||||| |||||||||| | ||||| || |||| |||||||||| | |||||| ||||||||| ||||    
T  25232132 ctcccattcaacacttgtttaacatttgagt-cctgacggtcaataggttgcatcctattcaacgcttcatttg 25232204  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 28587438 - 28587366
Alignment:
Q  231 cacttcattttatgtttattagctcgacgcctcgatcctcttagggttgcttgtatgaaagaaagaacacatc 303  Q
    |||||||||| | || ||||||||||||||||| ||||| ||||||| |||| ||||||||| ||||||||||    
T  28587438 cacttcatttaacgtctattagctcgacgcctcaatcctgttagggtggcttatatgaaagagagaacacatc 28587366  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 324
Target Start/End: Original strand, 12973408 - 12973485
Alignment:
Q  248 attagctcgacgcctcgatcc-tcttagggttgcttgtatgaaagaaagaacacatcatccttcatctttctcttgtt 324  Q
    |||||||||||||||||| || | ||||||| |||| || || |||||| |||||||| |||||||||| | ||||||    
T  12973408 attagctcgacgcctcgacccttgttagggtggcttataggatagaaagcacacatcacccttcatcttccacttgtt 12973485  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 21843065 - 21842993
Alignment:
Q  115 ctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatccaacgcttcttttg 188  Q
    ||||| |||| |||||||||||||||||||| |  |||| |||||||||| |||||||| ||  ||||||||||    
T  21843065 ctccctttcagcgcttgtttaacgtctgagt-ctagacggtcaataggttgcctcctattcagtgcttcttttg 21842993  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 25405032 - 25404972
Alignment:
Q  115 ctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatcca 176  Q
    |||||||||||| |||||||||||||||| | ||||| | |||||||||| |||||||||||    
T  25405032 ctcccattcaacacttgtttaacgtctgaat-cccgatggtcaataggtttcctcctatcca 25404972  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 187
Target Start/End: Original strand, 19054586 - 19054657
Alignment:
Q  115 ctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatccaacgcttctttt 187  Q
    |||||||||| || |||||||||||||||||||| | || ||||||| ||  |||||||||| ||||||||||    
T  19054586 ctcccattcagcgtttgtttaacgtctgagtcccag-cggtcaatagattgtctcctatccagcgcttctttt 19054657  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 16783361 - 16783291
Alignment:
Q  116 tcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatccaacgcttctttt 187  Q
    |||| |||| |||||||| ||||||||||| ||||||| | |||||||| |||||||| || ||||||||||    
T  16783361 tccccttcagcgcttgttcaacgtctgagt-cccgacggttaataggttgcctcctattcagcgcttctttt 16783291  T

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