View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_317 (Length: 250)
Name: NF9264A_low_317
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_317 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 38486395 - 38486637
Alignment:
| Q |
8 |
tgatatgaaccaggacaactactttgaggaggcacttaaagtacgaaatctcttggaagaattcaagcattactatggtattcgaaaaccaactattttg |
107 |
Q |
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| T |
38486395 |
tgatatgaaccaggacaactactttgaggaggcacttaaagtacgaaatctcttggaagaattcaagcattactatggtattcgaaaaccaactattttg |
38486494 |
T |
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| Q |
108 |
ggagtgagggaacatatatttacaggtttcgtttcctctcttgcttggttcatgtcagctcaggaatcaagttttgtcaccttagggcagagggttttgg |
207 |
Q |
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| T |
38486495 |
ggagtgagggaacatatatttacaggtttcgtttcttctcttgcttggtttatgtcagctcaggaatcaagttttgtcaccttagggcagagggttttgg |
38486594 |
T |
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| Q |
208 |
caaaccctttgaaaattcgaatgcattatggccatcctgatgt |
250 |
Q |
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| T |
38486595 |
caaaccctttgaaaattcgaatgcattatggccatcctgatgt |
38486637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 30120798 - 30121036
Alignment:
| Q |
12 |
atgaaccaggacaactactttgaggaggcacttaaagtacgaaatctcttggaagaattcaagcattactatggtattcgaaaaccaactattttgggag |
111 |
Q |
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| T |
30120798 |
atgaatcaggataactactttgaggaagcactcaagatgagaaatctccttgaagagtatagacgttactacggtgtccggaaaccaacaattttaggtg |
30120897 |
T |
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| Q |
112 |
tgagggaacatatatttacaggtttcgtttcctctcttgcttggttcatgtcagctcaggaatcaagttttgtcaccttagggcagagggttttggcaaa |
211 |
Q |
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| T |
30120898 |
tcagggaacacattttcactggctccgtgtcctctcttgcctggttcatgtcagcccaggagacaagtttcgtcaccctaggacagagggttttggcaaa |
30120997 |
T |
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| Q |
212 |
ccctttgaaaattcgaatgcattatggccatcctgatgt |
250 |
Q |
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| T |
30120998 |
tcctttgaaagttcgaatgcattatggtcatccagatgt |
30121036 |
T |
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