View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_32 (Length: 431)
Name: NF9264A_low_32
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 9 - 425
Target Start/End: Complemental strand, 40606312 - 40605897
Alignment:
| Q |
9 |
tggtgttaccgtgctactatttattttttcaataaatttaaattactttttataaagccaattcatttcgcattcaaaatcaattattatcacggccgta |
108 |
Q |
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| T |
40606312 |
tggtgttaccgtgctactatttattttttcaataaatttaaattactttttataaagccaattcatttcgcattcaaaatcaattattatcacggccgta |
40606213 |
T |
|
| Q |
109 |
aaaccaaccacgcatgtaaattagtgagctgccaccagtcaccactcaccaagagctgccgtttggagcaactaaattattgcctttacaatttacatat |
208 |
Q |
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| T |
40606212 |
aaaccaaccacgcatgtaaattagtgagctgccactagtcaccactcaccaagagctgccgtctggagcaagtaaattattgcctttacaatttacaaat |
40606113 |
T |
|
| Q |
209 |
acagggcctggttgtgcagctgagttagaatagaatagcttgcaagttgcaataggccgtagggagtatatgccccagatttgttggcgaatattggttc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40606112 |
acagggcctggttgtgcagctgagttagaatagaatagcttgcaagttgcaataggccgtagggagtat-tgccccagatttgttggcgaatattggttc |
40606014 |
T |
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| Q |
309 |
caataataatatatacaactgcacttggttgttgtgacttgtgagggagtttaaatgcacagaacctcaagaattcatttgttctttcaaaatatggtaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40606013 |
caataataatatatacaactgcacttggttgttgggacttgtgagggagtttaaatgcacagaacctcaagaattcatttgttctttcaaaatatggtaa |
40605914 |
T |
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| Q |
409 |
tattatcatgtaaattt |
425 |
Q |
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| T |
40605913 |
tattatcatgtaaattt |
40605897 |
T |
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