View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_330 (Length: 250)

Name: NF9264A_low_330
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_330
NF9264A_low_330
[»] chr1 (3 HSPs)
chr1 (102-243)||(24197649-24197789)
chr1 (7-74)||(24197467-24197534)
chr1 (192-243)||(17633331-17633382)
[»] chr6 (2 HSPs)
chr6 (96-241)||(4918881-4919030)
chr6 (177-240)||(10744195-10744258)
[»] chr3 (4 HSPs)
chr3 (182-234)||(38373546-38373598)
chr3 (193-243)||(49757685-49757735)
chr3 (180-228)||(3942072-3942120)
chr3 (191-233)||(39213540-39213582)
[»] chr2 (1 HSPs)
chr2 (192-243)||(33202438-33202489)
[»] chr8 (1 HSPs)
chr8 (100-171)||(8021336-8021408)
[»] chr5 (3 HSPs)
chr5 (192-243)||(27022661-27022712)
chr5 (192-228)||(18443872-18443908)
chr5 (192-236)||(37496042-37496086)
[»] chr7 (1 HSPs)
chr7 (185-239)||(7359805-7359859)


Alignment Details
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 102 - 243
Target Start/End: Original strand, 24197649 - 24197789
Alignment:
Q  102 gactttggagtagtgtattacaatcacaa-ctacatgcacaaaccactaacatattttgaaaagagtacatatttgttccattcctcattaattaaatat 200  Q
    ||||| ||||| ||| ||||||||||||| | |||||||||||||||||||||  |||||||||||||||||||||||| ||||| |||  |||||||||    
T  24197649 gacttcggagttgtgaattacaatcacaaacaacatgcacaaaccactaacat--tttgaaaagagtacatatttgttctattccgcatgtattaaatat 24197746  T
Q  201 gacttttgaagtcatatatttcaatcacaaacaataacaccaa 243  Q
    ||||| ||||||||||||||||||| |||||||||||||||||    
T  24197747 gacttatgaagtcatatatttcaattacaaacaataacaccaa 24197789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 24197467 - 24197534
Alignment:
Q  7 acaatttccatgaatcaatttcaaggagaatcatttcagaaacctatcaaaccttggtgaatgcatgc 74  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| ||| |||||    
T  24197467 acaatttccatgaatcaatttcaaggagaatcatttcacaaatctatcaaaccatggttaatccatgc 24197534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 17633331 - 17633382
Alignment:
Q  192 attaaatatgacttttgaagtcatatatttcaatcacaaacaataacaccaa 243  Q
    ||||||||| ||||||| |||||| |||||||||||||||||| ||||||||    
T  17633331 attaaatattacttttggagtcatgtatttcaatcacaaacaacaacaccaa 17633382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 241
Target Start/End: Original strand, 4918881 - 4919030
Alignment:
Q  96 aaatatgactttggagtagtgtattacaatcacaa----ctacatgcacaaaccactaacatattttgaaaagagtacatatttgttccattcctcatta 191  Q
    |||| ||||||||||||| |||||| |||||||||    ||| |||||||||||||| | |||| ||  | | | ||||||| | |  ||||||||||      
T  4918881 aaatctgactttggagtaatgtatttcaatcacaaactactatatgcacaaaccactcatatatcttacatataatacatatctatctcattcctcatgt 4918980  T
Q  192 attaaatatgacttttgaagtcatatatttcaatcacaaacaataacacc 241  Q
    ||||||||||||||||||| |||| ||||||||| | |||||| ||||||    
T  4918981 attaaatatgacttttgaaatcatgtatttcaattagaaacaacaacacc 4919030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 10744258 - 10744195
Alignment:
Q  177 ttccattcctcattaattaaatatgacttttgaagtcatatatttcaatcacaaacaataacac 240  Q
    ||||||| ||||| ||||||| |||||| ||| ||||||  |||||||||||||||||||||||    
T  10744258 ttccatttctcatgaattaaacatgactcttggagtcatgcatttcaatcacaaacaataacac 10744195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 38373546 - 38373598
Alignment:
Q  182 ttcctcattaattaaatatgacttttgaagtcatatatttcaatcacaaacaa 234  Q
    |||||||| ||||||| |||||| ||||||||||| |||||||||||||||||    
T  38373546 ttcctcatgaattaaacatgactcttgaagtcatacatttcaatcacaaacaa 38373598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 49757685 - 49757735
Alignment:
Q  193 ttaaatatgacttttgaagtcatatatttcaatcacaaacaataacaccaa 243  Q
    ||||||||||||| ||||||||| |||||||||||||||||| || |||||    
T  49757685 ttaaatatgacttctgaagtcatgtatttcaatcacaaacaacaaaaccaa 49757735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 3942072 - 3942120
Alignment:
Q  180 cattcctcattaattaaatatgacttttgaagtcatatatttcaatcac 228  Q
    ||||||||||  ||||||||||| |||||||||||| ||||||||||||    
T  3942072 cattcctcatgtattaaatatgatttttgaagtcatgtatttcaatcac 3942120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 39213540 - 39213582
Alignment:
Q  191 aattaaatatgacttttgaagtcatatatttcaatcacaaaca 233  Q
    ||||||| || |||||||||||||||||||| |||||||||||    
T  39213540 aattaaacattacttttgaagtcatatatttaaatcacaaaca 39213582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 33202489 - 33202438
Alignment:
Q  192 attaaatatgacttttgaagtcatatatttcaatcacaaacaataacaccaa 243  Q
    |||||||||||||||||||||||| ||||| ||||||||||||  |||||||    
T  33202489 attaaatatgacttttgaagtcatttattttaatcacaaacaacgacaccaa 33202438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 8021408 - 8021336
Alignment:
Q  100 atgactttggagtagtgtattacaatcac-aactacatgcacaaaccactaacatattttgaaaagagtacat 171  Q
    |||||||||||||| |||||| ||||||| ||||| |||||| ||||||||| |||||| | ||||| |||||    
T  8021408 atgactttggagtaatgtatttcaatcacaaactatatgcactaaccactaatatatttggcaaagaatacat 8021336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 27022712 - 27022661
Alignment:
Q  192 attaaatatgacttttgaagtcatatatttcaatcacaaacaataacaccaa 243  Q
    ||||||||| ||||||| ||||||  ||||||||||||||||| ||||||||    
T  27022712 attaaatataacttttggagtcatggatttcaatcacaaacaacaacaccaa 27022661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 18443872 - 18443908
Alignment:
Q  192 attaaatatgacttttgaagtcatatatttcaatcac 228  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  18443872 attaaatatgacttttgaagtcatgtatatcaatcac 18443908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 37496086 - 37496042
Alignment:
Q  192 attaaatatgacttttgaagtcatatatttcaatcacaaacaata 236  Q
    ||||||||||| | |||||||||||||||||||||| ||| ||||    
T  37496086 attaaatatgattattgaagtcatatatttcaatcataaaaaata 37496042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 7359859 - 7359805
Alignment:
Q  185 ctcattaattaaatatgacttttgaagtcatatatttcaatcacaaacaataaca 239  Q
    ||||| ||||||| |||||| ||||||||||||||||| |||| ||||| |||||    
T  7359859 ctcatgaattaaacatgactcttgaagtcatatatttcgatcaaaaacactaaca 7359805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University