View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_339 (Length: 249)
Name: NF9264A_low_339
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_339 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 7090017 - 7089792
Alignment:
| Q |
20 |
taatttacctcccgagttactattagacataattcaaagggtggaagctagtgaaacctcttggccatctcgccgcgcacttgtagcttgtgcctcagtt |
119 |
Q |
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| T |
7090017 |
taatttacctcccgagttactattagacataattcaaagggtggaagctagtgaaacctcttggccatctcgccgtgcacttgtagcttgtgcctcagtt |
7089918 |
T |
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| Q |
120 |
tgtagattatggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccatatatcactgaagcaggaaannnnnnnnn |
219 |
Q |
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| T |
7089917 |
tgtagattatggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcactgaagcaggtaatttttt--- |
7089821 |
T |
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| Q |
220 |
cttttcactttatttatgtatttgatttga |
249 |
Q |
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| T |
7089820 |
-ttttcactttatttatgtatttgatttga |
7089792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 24 - 207
Target Start/End: Complemental strand, 7669839 - 7669656
Alignment:
| Q |
24 |
ttacctcccgagttactattagacataattcaaagggtggaagctagtgaaacctcttggccatctcgccgcgcacttgtagcttgtgcctcagtttgta |
123 |
Q |
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| T |
7669839 |
ttacctcctgagttactattagacataattcaaagggtggaagctagtgaaaccacttggccatctctccgcgcacttgtagcttgtgcctcagtttgta |
7669740 |
T |
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| Q |
124 |
gattatggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccatatatcactgaagcagg |
207 |
Q |
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| T |
7669739 |
gattgtggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcattgaagcagg |
7669656 |
T |
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