View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_342 (Length: 248)
Name: NF9264A_low_342
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_342 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 43212836 - 43212634
Alignment:
| Q |
7 |
agattatactgaaattaaataccgtcaatcaatttagtgtctacattaatcaattcaatgaatgggaagtgaaagtcgctcattcataccaagaggtaaa |
106 |
Q |
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| T |
43212836 |
agattatactgaaattaaataccgtcaatcaatttagtgtctacattaatcaattcaatgaatgggaagtgaaggtcgctcattcataccaagaggtaaa |
43212737 |
T |
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| Q |
107 |
tcaatgctttgatgcgcttgcaaatttaggatgctctttgaataaccctgtgatgttttatggatcatgtccaactcatattaggaatttgtttgtaact |
206 |
Q |
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| T |
43212736 |
tcaatgctttgatgcgcttgcaaatttaggatgctctttgaataaccctgtgatgttctatggatcatatccaactcatattaggaatttgtttgtaact |
43212637 |
T |
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| Q |
207 |
gat |
209 |
Q |
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||| |
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| T |
43212636 |
gat |
43212634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 43212574 - 43212530
Alignment:
| Q |
204 |
actgatctagggtgttttttaaaatatcaagtataacaggatggt |
248 |
Q |
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| T |
43212574 |
actgatctagggtgtttttttaaatatcaagtataacaggatggt |
43212530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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