View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_345 (Length: 248)

Name: NF9264A_low_345
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_345
NF9264A_low_345
[»] chr1 (11 HSPs)
chr1 (9-153)||(13244107-13244251)
chr1 (158-248)||(13244450-13244540)
chr1 (152-248)||(13080788-13080884)
chr1 (84-153)||(12963575-12963644)
chr1 (79-146)||(19278827-19278894)
chr1 (150-206)||(19279089-19279145)
chr1 (157-216)||(13094604-13094663)
chr1 (157-216)||(13130033-13130092)
chr1 (9-88)||(19278730-19278809)
chr1 (151-225)||(12963797-12963871)
chr1 (157-206)||(13161736-13161785)


Alignment Details
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 13244107 - 13244251
Alignment:
Q  9 gagatgaagggcaaggcagcaaaagaaaatcttcaccacttcttggacaaatgtataactgagtacaaaggaaatgaagatgtagatgaatctcgttatt 108  Q
    |||| ||||||||||||||| | ||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13244107 gagaagaagggcaaggcagctagagaaaatcttcaccaattcttggagaaatgtataactgattacaaaggaaatgaagatgtagatgaatctcgttatt 13244206  T
Q  109 gcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa 153  Q
    |||||||||||||||||||||| ||| ||||||||||| ||||||    
T  13244207 gcctgctaaaagaactaatgaaggaaagattgggaaagggggaaa 13244251  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 158 - 248
Target Start/End: Original strand, 13244450 - 13244540
Alignment:
Q  158 ttgataagcttgtttaccttcatggagccatatgtgaaaccttatggctatttcctcctctgccatttccgcaccagtgtgctatcaaatc 248  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||| |||||| |||| |||| |||||||||||    
T  13244450 ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcctctggcatttcagcacaagtgcgctatcaaatc 13244540  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 13080788 - 13080884
Alignment:
Q  152 aagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttatggctatttcctcctctgccatttccgcaccagtgtgctatcaaatc 248  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||| |||| || |  |||||| |||| ||||||||||||||||    
T  13080788 aagagcttgataagctagtttaccttcatggagccatatgtgaagccttaaggctatatccttctgtagcatttcagcacaagtgtgctatcaaatc 13080884  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 12963575 - 12963644
Alignment:
Q  84 gaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa 153  Q
    ||||| || |||||||||| || ||||||||||||||| |||||||| ||||||||||||||| ||||||    
T  12963575 gaagacgtggatgaatctcattcttgcctgctaaaagatctaatgaaggaaggattgggaaagggggaaa 12963644  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 19278827 - 19278894
Alignment:
Q  79 gaaatgaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaag 146  Q
    |||||||||| |  |||||||||| |||||||||| |||||||||||||||| ||| |||||||||||    
T  19278827 gaaatgaagacgcggatgaatctcattattgcctggtaaaagaactaatgaaggaaagattgggaaag 19278894  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 19279089 - 19279145
Alignment:
Q  150 gaaagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttatggct 206  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||||| ||||| ||||    
T  19279089 gaaagagcttgataagctagtttatcttcatggagctatatgtgaagccttaaggct 19279145  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 13094663 - 13094604
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttatggctatttcctcct 216  Q
    ||||||||||| || ||||| |||||||| ||||||||||||||| |||| | |||||||    
T  13094663 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcct 13094604  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 13130092 - 13130033
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttatggctatttcctcct 216  Q
    ||||||||||| || ||||| |||||||| ||||||||||||||| |||| | |||||||    
T  13130092 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcct 13130033  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 19278730 - 19278809
Alignment:
Q  9 gagatgaagggcaaggcagcaaaagaaaatcttcaccacttcttggacaaatgtataactgagtacaaaggaaatgaaga 88  Q
    |||| |||||||| || ||| ||||||||||||||| | |||||| ||||||||||| || | ||||||||  |||||||    
T  19278730 gagaagaagggcacggtagctaaagaaaatcttcacgaattcttgaacaaatgtatatcttattacaaaggtgatgaaga 19278809  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 12963797 - 12963871
Alignment:
Q  151 aaagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttatggctatttcctcctctgccattt 225  Q
    |||| |||||||||||||||||| ||||||||||| || |||||| | ||| |||| | ||||||| | ||||||    
T  12963797 aaagggcttgataagcttgtttatcttcatggagctatttgtgaagctttaaggctttatcctcctataccattt 12963871  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 13161785 - 13161736
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttatggct 206  Q
    ||||||||||| || ||||| |||||||| ||||||||||||||| ||||    
T  13161785 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggct 13161736  T

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