View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_352 (Length: 247)
Name: NF9264A_low_352
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_352 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 4851668 - 4851457
Alignment:
| Q |
16 |
atctgacactccttagtccctgtacctttttgtggtggccattttcaaggtaacaaacctttttataaaaccttggcaacaactaaactactaatgctca |
115 |
Q |
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| T |
4851668 |
atctgacactccttagtccctgtacctttttgtggtggccattttcaaggtaacaaacctttttataaaaccttggcaacaagtaaactactaatgctca |
4851569 |
T |
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| Q |
116 |
catacgtatttaatctttcgttggttatgtaatttttgttcgttatgttaaaacggagaagaacggtatcaggcacttcttagtccctgtacctttttgc |
215 |
Q |
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| T |
4851568 |
catacgtatttaatctttcgttgtttatgtaatttttgttcgttatgttaaaacggagaagaacggtatcaggcactccttagtccctgtacctttttgc |
4851469 |
T |
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| Q |
216 |
ggtggccatttt |
227 |
Q |
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|||||||||||| |
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| T |
4851468 |
ggtggccatttt |
4851457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 4851495 - 4851387
Alignment:
| Q |
22 |
cactccttagtccctgtacctttttgtggtggccattttcaaggtaacaaacctttttataaaaccttggcaacaactaaactactaatgctcacatacg |
121 |
Q |
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| T |
4851495 |
cactccttagtccctgtacctttttgcggtggccattttcacggtaacaaaactttttttagaaccttggcaactactaaactactgatgttcacatacg |
4851396 |
T |
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| Q |
122 |
tatttaatc |
130 |
Q |
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| T |
4851395 |
tatttaatc |
4851387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 4851715 - 4851624
Alignment:
| Q |
136 |
ttggttatgtaatttttgttcgttatgttaaaacggagaagaacggtatcaggcacttcttagtccctgtacctttttgcggtggccatttt |
227 |
Q |
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| T |
4851715 |
ttggttatgtgatttttgttctctatgttataacggagaagaacagtatctgacactccttagtccctgtacctttttgtggtggccatttt |
4851624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 214
Target Start/End: Complemental strand, 4848404 - 4848321
Alignment:
| Q |
131 |
tttcgttggttatgtaatttttgttcgttatgttaaaacggagaagaacggtatcaggcacttcttagtccctgtacctttttg |
214 |
Q |
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| T |
4848404 |
tttcgttgtttatgtgatttttgttctctatgttataacggagaagaacagaatcagacactccttagtccctgtacctttttg |
4848321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 4848359 - 4848321
Alignment:
| Q |
9 |
gaacaaaatctgacactccttagtccctgtacctttttg |
47 |
Q |
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| T |
4848359 |
gaacagaatcagacactccttagtccctgtacctttttg |
4848321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 5140867 - 5140901
Alignment:
| Q |
91 |
gcaacaactaaactactaatgctcacatacgtatt |
125 |
Q |
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| T |
5140867 |
gcaacaactaaacaactaatgctcacatacgtatt |
5140901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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