View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_365 (Length: 245)
Name: NF9264A_low_365
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_365 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 22 - 230
Target Start/End: Complemental strand, 32724922 - 32724714
Alignment:
| Q |
22 |
gtctagacataagaaccatacttttttctccgaaccgtgaaatgctgagaaagaatcttttaacatccactaccttcaacccctttctaaaaagcccgtt |
121 |
Q |
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|||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||| |
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| T |
32724922 |
gtcttgacataagaaccatacttttttctctgaaccatgaaatgctgagaaagaatcttttaacatccattaccttcaacacctttctaaaaagcctgtt |
32724823 |
T |
|
| Q |
122 |
aacccaaataacttgtgtcaccattgatacaaaacaaaaattactctttctctaataaacatgtaaacccatcatctctgtatcattcttgtcttctcat |
221 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
32724822 |
aacccaaataacttatgtcaccattgatacaaaacaaaaattactctttctctaataaacatgtaaacccataatctctctatcattcttgtcttctcat |
32724723 |
T |
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| Q |
222 |
gtttcttct |
230 |
Q |
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||||||||| |
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| T |
32724722 |
gtttcttct |
32724714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 38 - 225
Target Start/End: Complemental strand, 32723453 - 32723264
Alignment:
| Q |
38 |
catacttttttctccgaaccgtgaaatgctgagaaagaatcttttaacatccactaccttcaacccctttctaaaaagcccgtta--acccaaataactt |
135 |
Q |
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|||||||||| || ||||| ||||||||||| |||||||||| |||||||||||||||||||| ||||||| |||| | |||| || |||||||||| |
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| T |
32723453 |
catactttttcatctgaaccatgaaatgctgataaagaatcttgtaacatccactaccttcaacacctttctcaaaaacatgttataactcaaataactt |
32723354 |
T |
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| Q |
136 |
gtgtcaccattgatacaaaacaaaaattactctttctctaataaacatgtaaacccatcatctctgtatcattcttgtcttctcatgttt |
225 |
Q |
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||||||||||| ||| ||||||||||||||| |||||||| ||||| |||||||||||||||||| |||| ||| ||||||||||||||| |
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| T |
32723353 |
gtgtcaccattaatataaaacaaaaattactgtttctctactaaacctgtaaacccatcatctctctatctttcctgtcttctcatgttt |
32723264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 4002081 - 4001942
Alignment:
| Q |
22 |
gtctagacataagaaccatacttttttctccgaaccgtgaaatgctgagaaagaatcttttaacatccactaccttcaacccctttctaaaaagcccgtt |
121 |
Q |
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|||||| ||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||| |||||| |||| | ||| |
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| T |
4002081 |
gtctaggcataagaaccatacttttttctctaaaccatgaaattatgagaaagaatcttttaacatccactaccttcaacatctttctcaaaaacatgtt |
4001982 |
T |
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| Q |
122 |
aacccaaataacttgtgtcaccattgatacaaaacaaaaa |
161 |
Q |
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||||||||||||||| || |||||||||| |||| ||||| |
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| T |
4001981 |
aacccaaataacttgcgttaccattgataaaaaaaaaaaa |
4001942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 38 - 230
Target Start/End: Complemental strand, 15720179 - 15719984
Alignment:
| Q |
38 |
catacttttttctccgaaccgtgaaatgctgagaaagaatcttttaacatccactaccttcaacccctttctaaaaagcccgtta--acccaaataactt |
135 |
Q |
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|||||||||| || ||||| |||||| ||||||||||||||| |||||||||||||||||||| ||||||| |||| | |||| ||||||||||||| |
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| T |
15720179 |
catactttttcatctgaaccatgaaatactgagaaagaatcttgtaacatccactaccttcaacacctttctcaaaaacttgttataacccaaataactt |
15720080 |
T |
|
| Q |
136 |
gtgtcaccattgatacaaaacaaaaa-ttactctttctctaataaacatgtaaacccatcatctctgtatcattcttgtcttctcatgtttcttct |
230 |
Q |
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||||||||||| |||||||||||||| |||||||||||||| ||||| |||| ||||||||||||| |||| ||||||||||||||||||| |||| |
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| T |
15720079 |
gtgtcaccattaatacaaaacaaaaaattactctttctctactaaacctgtacacccatcatctctctatctttcttgtcttctcatgtttgttct |
15719984 |
T |
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