View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_370 (Length: 245)

Name: NF9264A_low_370
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_370
NF9264A_low_370
[»] chr7 (8 HSPs)
chr7 (39-235)||(26617737-26617933)
chr7 (90-231)||(39865471-39865612)
chr7 (39-231)||(33190302-33190494)
chr7 (39-166)||(14719370-14719501)
chr7 (39-190)||(7578536-7578687)
chr7 (141-222)||(14719287-14719367)
chr7 (142-236)||(37479524-37479617)
chr7 (39-157)||(35339023-35339141)
[»] chr4 (16 HSPs)
chr4 (39-223)||(52311220-52311404)
chr4 (63-231)||(54687659-54687826)
chr4 (69-214)||(20275938-20276082)
chr4 (69-231)||(26997226-26997388)
chr4 (39-199)||(5350929-5351089)
chr4 (63-231)||(54678539-54678709)
chr4 (42-227)||(17365674-17365858)
chr4 (69-231)||(26992029-26992194)
chr4 (139-231)||(6408036-6408127)
chr4 (140-231)||(22746635-22746726)
chr4 (39-201)||(27360193-27360354)
chr4 (39-231)||(12746523-12746715)
chr4 (177-231)||(14000179-14000231)
chr4 (42-164)||(18902113-18902234)
chr4 (177-228)||(13994875-13994924)
chr4 (109-165)||(20355099-20355155)
[»] chr1 (6 HSPs)
chr1 (62-235)||(40274356-40274530)
chr1 (69-232)||(40279148-40279311)
chr1 (60-231)||(29530120-29530292)
chr1 (60-224)||(29547775-29547940)
chr1 (40-203)||(28201654-28201817)
chr1 (108-190)||(27417427-27417509)
[»] chr5 (8 HSPs)
chr5 (39-231)||(16633255-16633446)
chr5 (69-231)||(19779954-19780116)
chr5 (69-223)||(19479453-19479607)
chr5 (69-232)||(19783201-19783363)
chr5 (39-166)||(17604690-17604821)
chr5 (141-203)||(17604824-17604886)
chr5 (39-82)||(21575046-21575089)
chr5 (39-131)||(35105030-35105122)
[»] chr3 (8 HSPs)
chr3 (117-230)||(8832533-8832646)
chr3 (105-236)||(39875817-39875946)
chr3 (118-231)||(44126710-44126823)
chr3 (39-161)||(21587185-21587306)
chr3 (179-231)||(13921708-13921758)
chr3 (39-155)||(20458819-20458933)
chr3 (39-112)||(20463226-20463299)
chr3 (147-231)||(7873835-7873918)
[»] chr2 (3 HSPs)
chr2 (39-203)||(19912279-19912443)
chr2 (39-116)||(34111054-34111131)
chr2 (43-165)||(45276354-45276475)
[»] chr8 (6 HSPs)
chr8 (140-232)||(17909890-17909983)
chr8 (172-231)||(10739137-10739196)
chr8 (172-231)||(15007178-15007236)
chr8 (176-231)||(36911928-36911983)
chr8 (139-220)||(10734068-10734149)
chr8 (92-216)||(12145639-12145764)
[»] chr6 (1 HSPs)
chr6 (179-231)||(23599934-23599986)
[»] scaffold0248 (1 HSPs)
scaffold0248 (177-231)||(16258-16312)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 39 - 235
Target Start/End: Complemental strand, 26617933 - 26617737
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26617933 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 26617834  T
Q  139 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctttgat 235  Q
    |||  ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26617833 ttgaatcctataaatagggctcatattgaattgtaaagacacacttgtgaagagaataatacaaagtgttttcatcttcttcttcctcttctttgat 26617737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 90 - 231
Target Start/End: Original strand, 39865471 - 39865612
Alignment:
Q  90 agtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaa 189  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||| | |||  |||||||||||  ||||    
T  39865471 agtgaatagttagtggaccttaattgtcttgatcactcacttactcatcttgtgtactataaatagggctcatatcgtattgcaaagacacactcttgaa 39865570  T
Q  190 gagaataatacaaagtgctttcatcttcttcttcctcttctt 231  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  39865571 gagaataatacaaagtgctttcatcttctccttcctcttctt 39865612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 39 - 231
Target Start/End: Complemental strand, 33190494 - 33190302
Alignment:
Q  39 ttagtggatttccatcctta-gtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcat 137  Q
    ||||||||| | |||||||| ||||||||| |||||||||   |||||  | |||||||||||| ||||||||| ||  |||||||||||||||| ||||    
T  33190494 ttagtggatgtacatccttaagtctttcaccttcctataatttccattggtaagtgaatagttactggaccttagttgccttgatcactcacttactcat 33190395  T
Q  138 cttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 231  Q
    |||||||  ||||| |||| ||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33190394 cttgtgtattataa-taggtctcatattgtattgcaaagacacacttgtgaagagaataatacaaagtgctttcatcttctccttcctcttctt 33190302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 166
Target Start/End: Complemental strand, 14719501 - 14719370
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaata----gttagtggaccttaattatcttgatcactcacttatt 134  Q
    ||||||||| ||| ||||||||||| ||| |||||||||||||||||| ||||||||||    ||||||||||||||||||| |||||||||||  ||||    
T  14719501 ttagtggatgtccgtccttagtcttccaccttcctataacccccattagtgagtgaatatatagttagtggaccttaattattttgatcactcagctatt 14719402  T
Q  135 catcttgtgtcctataaataggactcatattg 166  Q
    ||| |||| || ||||||||||||||||||||    
T  14719401 cattttgtatcttataaataggactcatattg 14719370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 190
Target Start/End: Original strand, 7578536 - 7578687
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 138  Q
    ||||||||| ||||||||||||||| ||| |||| ||||  ||||| | ||| || || || ||||| |||||||||  ||||||| ||||||  | ||     
T  7578536 ttagtggatgtccatccttagtcttccaccttcccataagtcccataagtgaatggatggtcagtggtccttaattactttgatcattcacttgcttata 7578635  T
Q  139 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaag 190  Q
    |||| ||||||||||||||||||||||  | | |||||||||||||| ||||    
T  7578636 ttgtatcctataaataggactcatattatagtataaagacacacttgagaag 7578687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 14719367 - 14719287
Alignment:
Q  141 gtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttctt 222  Q
    |||||||||||||||| ||||||||| | | ||||  ||||||||||||||||||||||||||  |||||||||||||||||    
T  14719367 gtgtcctataaatagggctcatattgtagtgtaaatgcacacttgtgaagagaataatacaaa-agctttcatcttcttctt 14719287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 37479617 - 37479524
Alignment:
Q  142 tgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctttgatt 236  Q
    |||||||||||||||||  |||||| | | |||||| ||| |||||||||||||||||||||  |||||| || |||||||| | ||||||||||    
T  37479617 tgtcctataaataggacctatattgcaatgtaaagaaacatttgtgaagagaataatacaaa-agctttcttcatcttcttctttttctttgatt 37479524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 157
Target Start/End: Complemental strand, 35339141 - 35339023
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 138  Q
    ||||||||| |||||| |||||||| ||| |||||||||| ||||| | ||| || || |||| ||| |||||||||  |||||   |||| |  ||||     
T  35339141 ttagtggatgtccatcattagtcttccaccttcctataactcccataagtgaatggatggttaatggtccttaattactttgatatttcacatgctcata 35339042  T
Q  139 ttgtgtcctataaatagga 157  Q
    |||| ||||||||||||||    
T  35339041 ttgtatcctataaatagga 35339023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 39 - 223
Target Start/End: Complemental strand, 52311404 - 52311220
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 138  Q
    |||||| || ||||||| ||||||| ||| ||||||||||||| |||  |||||||||||||||||||||||||||   ||||||||||||||| |||||    
T  52311404 ttagtgaatgtccatccctagtcttccaccttcctataacccctattggtgagtgaatagttagtggaccttaatttctttgatcactcacttagtcatc 52311305  T
Q  139 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttc 223  Q
    ||||||||||||||||||| |||||||| | | |||||||||| ||||||||||||||||||||| || ||||||| ||||||||    
T  52311304 ttgtgtcctataaataggattcatattgcagtgtaaagacacatttgtgaagagaataatacaaaatgttttcatcatcttcttc 52311220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 54687826 - 54687659
Alignment:
Q  63 ttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcat 162  Q
    ||||||||||||||||||| |||| | |||||||| |||| |||||| |||| ||||||||||| ||||| ||||||||| | |||||||||||  ||||    
T  54687826 ttcactttcctataacccc-attagtaagtgaataattaggggacctcaattttcttgatcacttacttactcatcttgtatactataaatagggttcat 54687728  T
Q  163 attgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 231  Q
    |||| ||| |||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  54687727 attgtattataaagatacacttgtgaagagaataatacaaagtgatttcatcttctccttcctcttctt 54687659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 69 - 214
Target Start/End: Original strand, 20275938 - 20276082
Alignment:
Q  69 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 168  Q
    ||||||||||  |||||| | ||||||||||||||||||||||| |  |||||||||||||||| ||||||| ||| ||||||||||||||||||||| |    
T  20275938 ttcctataacttccattagtaagtgaatagttagtggaccttaactgccttgatcactcacttactcatcttatgtactataaataggactcatattgta 20276037  T
Q  169 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatc 214  Q
    || ||||||||||| |||||| |||||||||||||| |||||||||    
T  20276038 ttgtaaagacacacatgtgaacagaataatacaaag-gctttcatc 20276082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 69 - 231
Target Start/End: Original strand, 26997226 - 26997388
Alignment:
Q  69 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 168  Q
    |||||||||| | ||||| | |||||||||| |||| ||||||||    |||| |||| ||||| ||||||||||| ||||||||||||||||||||  |    
T  26997226 ttcctataactctcattagtaagtgaatagtcagtgaaccttaatagctttgaacactaacttactcatcttgtgtactataaataggactcatattata 26997325  T
Q  169 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 231  Q
    ||  ||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  26997326 ttgcaaagacatacttgtgaagagaataatacaaagtgctttcatcttctcctttctcttctt 26997388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 39 - 199
Target Start/End: Original strand, 5350929 - 5351089
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 138  Q
    ||||||||| ||||||||||||||| ||| ||||||||| | ||||||  |||||||||||||| ||||||||||||| |||||| | |||||| ||||     
T  5350929 ttagtggatgtccatccttagtcttccaccttcctataatctccattagcgagtgaatagttagcggaccttaattattttgatcgc-cacttactcatt 5351027  T
Q  139 ttgtgtcctataaataggactcatattgaatt-ctaaagacacacttgtgaagagaataata 199  Q
    |||||||||||||||||||||||||||  |||   ||||||||||||||||| |||||||||    
T  5351028 ttgtgtcctataaataggactcatattttattgaaaaagacacacttgtgaatagaataata 5351089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 54678709 - 54678539
Alignment:
Q  63 ttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactc--acttattcatcttgtgtcctataaataggactc 160  Q
    ||||| |||||||||||||| ||| | ||||||||||| |||||||||||||   |||||||| |  ||||| |||||||||||  ||||||||||||||    
T  54678709 ttcaccttcctataacccccgttattaagtgaatagttggtggaccttaatttcattgatcacacttacttactcatcttgtgtattataaataggactc 54678610  T
Q  161 atattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 231  Q
    |||||  ||| |||||| ||  ||||||||||||||||| |||||| ||||||||||| ||||||||||||    
T  54678609 atattatattgtaaagatacgtttgtgaagagaataataaaaagtgttttcatcttctccttcctcttctt 54678539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 227
Target Start/End: Original strand, 17365674 - 17365858
Alignment:
Q  42 gtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttg 141  Q
    |||||| | ||||||||||||| || |||| |||||||  ||||| |||||||||||||||||||||||||||   ||||||||||||||| ||||||||    
T  17365674 gtggatgttcatccttagtcttccattttcttataaccttcattagtgagtgaatagttagtggaccttaatttctttgatcactcacttactcatcttg 17365773  T
Q  142 tgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctct 227  Q
    ||||||||||||| | ||| ||||  | | |||||| ||  ||||||| | ||||||||||| || ||||| | ||||||||||||    
T  17365774 tgtcctataaataaggctc-tattatagtgtaaagaaacctttgtgaacaaaataatacaaaatgttttcaccatcttcttcctct 17365858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 69 - 231
Target Start/End: Original strand, 26992029 - 26992194
Alignment:
Q  69 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 168  Q
    |||||||||  | ||||| | |||||||||||||||||||||||||  |||||||||| |||||||||||  |||| ||||||||||| ||||||||  |    
T  26992029 ttcctataaatctcattagtaagtgaatagttagtggaccttaattgccttgatcactaacttattcatcccgtgtactataaatagggctcatattata 26992128  T
Q  169 ttctaaagacacacttgtgaagag---aataatacaaagtgctttcatcttcttcttcctcttctt 231  Q
    ||  ||||| | ||||||||||||   ||||||||||||| ||||||||||||  |||||||||||    
T  26992129 ttgcaaagatatacttgtgaagagaataataatacaaagtactttcatcttctctttcctcttctt 26992194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 231
Target Start/End: Original strand, 6408036 - 6408127
Alignment:
Q  139 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 231  Q
    ||||||||||||||||||||  |||||| |   ||||| |||||||||||||||||||||||||| | ||||||||||||||||| |||||||    
T  6408036 ttgtgtcctataaataggacctatattgcaaagtaaaggcacacttgtgaagagaataatacaaaat-ctttcatcttcttcttcttcttctt 6408127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 22746635 - 22746726
Alignment:
Q  140 tgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 231  Q
    |||||||||||||||||||  | |||  | | ||| ||||| |||||||||||||||||||||||| |||||||||||||| ||||| ||||    
T  22746635 tgtgtcctataaataggacctacattacaatgtaatgacacccttgtgaagagaataatacaaagtactttcatcttcttcctcctcgtctt 22746726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 201
Target Start/End: Original strand, 27360193 - 27360354
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 138  Q
    ||||||||| | ||||  ||||||| ||| |||||||||| || || ||||| |  || |||||||| |||||||||  ||||||| |||||| |||||     
T  27360193 ttagtggatgttcatcagtagtcttccaccttcctataactcc-ataaatgaatagatggttagtggtccttaattactttgatcattcacttgttcata 27360291  T
Q  139 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataataca 201  Q
    |||| ||||||||||||||||  ||||  | | ||||||||| |||||||| | |||||||||    
T  27360292 ttgtatcctataaataggacttgtattatagtgtaaagacacgcttgtgaaaaaaataataca 27360354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 231
Target Start/End: Complemental strand, 12746715 - 12746523
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 138  Q
    ||||||||| |||||||| | |||| ||| ||||||||||| | |||| ||| || ||| ||| ||| ||||||| |  ||||||| ||||||  ||||     
T  12746715 ttagtggatgtccatcctcaatcttccaccttcctataaccactattagtgaatgtatacttaatggtccttaatgactttgatcattcacttgctcat- 12746617  T
Q  139 ttgtgtcctataaataggactcatattgaattctaaa-gacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 231  Q
    ||| ||||||||||||| ||  |||||  | | | || ||||||||| |||| ||||||||||||  | |||||||||||||| ||||||||||    
T  12746616 ttgcgtcctataaatagaacctatattataatgtgaatgacacacttatgaaaagaataatacaatatactttcatcttcttcctcctcttctt 12746523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 14000179 - 14000231
Alignment:
Q  177 acacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 231  Q
    ||||||||||||||||||||| |||||  ||||||||| ||||||||||||||||    
T  14000179 acacacttgtgaagagaataacacaaa--gctttcatcatcttcttcctcttctt 14000231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 164
Target Start/End: Complemental strand, 18902234 - 18902113
Alignment:
Q  42 gtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttg 141  Q
    |||||| | |||||||| |||||||| ||||||||||| |||||| ||| || ||  ||| ||| |||||||| | ||||||  ||||||  |||| |||    
T  18902234 gtggatgttcatccttaatctttcaccttcctataacctccattagtgaatggatgcttaatggtccttaattgttttgatctttcacttgctcat-ttg 18902136  T
Q  142 tgtcctataaataggactcatat 164  Q
    ||||||||||||  |||||||||    
T  18902135 tgtcctataaatctgactcatat 18902113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 13994875 - 13994924
Alignment:
Q  177 acacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctctt 228  Q
    ||||||||||||||||||||| |||||  ||||||||| |||||||||||||    
T  13994875 acacacttgtgaagagaataacacaaa--gctttcatcatcttcttcctctt 13994924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 20355155 - 20355099
Alignment:
Q  109 ttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatatt 165  Q
    |||||||  ||||||| ||| || ||||| |||| ||||||||||||||||||||||    
T  20355155 ttaattactttgatcattcagttgttcatattgtatcctataaataggactcatatt 20355099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 62 - 235
Target Start/End: Complemental strand, 40274530 - 40274356
Alignment:
Q  62 tttcactttcctataacccccattaatgagtgaa-tagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactc 160  Q
    |||||| ||| |||||| ||||||| | |||||| |||||||||||| ||||||  |||||||||||||||| |||||||||||  |||||||||| ||     
T  40274530 tttcaccttcttataactcccattagtaagtgaaatagttagtggactttaattgccttgatcactcacttactcatcttgtgtattataaatagggcta 40274431  T
Q  161 atattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctttgat 235  Q
    |||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40274430 atattgtattgcaaagacacacttgtgaagagaataatacaaagtgctttcatcttctccttcctcttctttgat 40274356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 69 - 232
Target Start/End: Complemental strand, 40279311 - 40279148
Alignment:
Q  69 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 168  Q
    |||||||||| ||||||| | |||||||||||||||||||||||||  |||||||||||||||| ||||||||||| |||||||||||  |||||||| |    
T  40279311 ttcctataactcccattagtaagtgaatagttagtggaccttaattgccttgatcactcacttactcatcttgtgtactataaatagggttcatattgta 40279212  T
Q  169 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttcttt 232  Q
    ||  ||||||||| ||||||||||||||||| |||||| ||||||||||| ||| |||||||||    
T  40279211 ttgcaaagacacatttgtgaagagaataatataaagtgttttcatcttctcctttctcttcttt 40279148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 231
Target Start/End: Original strand, 29530120 - 29530292
Alignment:
Q  60 tctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggact 159  Q
    |||| ||||||||| ||| |||||| | | | || || |||||||| ||||||||   ||||||| ||||||  |||| ||||||| ||||||||||||     
T  29530120 tcttccactttcctgtaaaccccatcagtaaatgcatggttagtggtccttaattggtttgatcattcacttgctcat-ttgtgtcatataaataggacc 29530218  T
Q  160 catattgaattctaaaga-cacacttgtgaag-agaataatacaaagtgctttcatcttcttcttcctcttctt 231  Q
     |||||| | | |||||| ||||||||  ||  |||||||||||||||| |||||||| |||||||||||||||    
T  29530219 tatattgtaatgtaaagaacacacttgaaaaatagaataatacaaagtgttttcatctccttcttcctcttctt 29530292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 29547775 - 29547940
Alignment:
Q  60 tctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggact 159  Q
    |||| ||| ||||||||| |||||||| | | || || |||||||| ||||||||   ||||||| ||||||  |||| || |||||||||||||||||     
T  29547775 tcttccaccttcctataatccccattagtaaatgcatggttagtggtccttaatttgtttgatcattcacttgctcat-ttatgtcctataaataggacc 29547873  T
Q  160 catattgaattctaaaga-cacacttgtgaa-gagaataatacaaagtgctttcatcttcttcttcc 224  Q
     |||||| | | |||||| ||||||||  || |||||||||||||| |  |||||||||||||||||    
T  29547874 tatattgtaatgtaaagaacacacttgaaaaagagaataatacaaaatattttcatcttcttcttcc 29547940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 203
Target Start/End: Complemental strand, 28201817 - 28201654
Alignment:
Q  40 tagtggatttccatccttagtctttcactttcctataaccc-ccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 138  Q
    |||||||| |||||||||  |||| ||| |||||||||||| |||||| ||| || || |||||| | | ||||||   ||||| | |||||| |||||     
T  28201817 tagtggatgtccatcctttatcttccaccttcctataaccctccattagtgaatgtatggttagtagtctttaattgctttgataattcacttgttcat- 28201719  T
Q  139 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaa 203  Q
    || ||||||||||||| ||||||||||  | | |||   ||||||||| ||||||||| ||||||    
T  28201718 ttatgtcctataaatatgactcatattttaatgtaatagcacacttgtaaagagaatagtacaaa 28201654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 190
Target Start/End: Complemental strand, 27417509 - 27417427
Alignment:
Q  108 cttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaag 190  Q
    ||||||||  ||||||| ||||||| |||| |||| || |||||||||||||| ||||  | | |||||||||||||| ||||    
T  27417509 cttaattaatttgatcattcacttactcatattgtatcttataaataggactcgtattataatgtaaagacacacttgagaag 27417427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 39 - 231
Target Start/End: Complemental strand, 16633446 - 16633255
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 138  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||| ||||  |||||||||||||||||||||||||||  ||||||| ||||||| ||| |    
T  16633446 ttagtggatgtccatccttagtcttccaccttcctataacccc-attagcgagtgaatagttagtggaccttaattactttgatcattcacttactcaac 16633348  T
Q  139 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 231  Q
    |||||||||||||||||| ||||||||| |||  |||||||| |||||||||||||||||| |||  | ||||||| || ||||| |||||||    
T  16633347 ttgtgtcctataaatagggctcatattgtattgcaaagacacgcttgtgaagagaataatataaaaggttttcatcatcatcttcttcttctt 16633255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 69 - 231
Target Start/End: Complemental strand, 19780116 - 19779954
Alignment:
Q  69 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 168  Q
    |||||||||| | ||||| | |||||||||||||||||||||||||| |||||||||||||||| || |||||||| ||||||||||| ||||||||| |    
T  19780116 ttcctataactctcattagtaagtgaatagttagtggaccttaattaccttgatcactcacttactcgtcttgtgtactataaatagggctcatattgta 19780017  T
Q  169 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 231  Q
    ||  |||||||||||  ||||||||||||||||||||||||| |||||||  |||||||||||    
T  19780016 ttacaaagacacactcttgaagagaataatacaaagtgcttttatcttctcattcctcttctt 19779954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 19479607 - 19479453
Alignment:
Q  69 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 168  Q
    |||||||||| | ||||| | |||||||||||||||||||||||||  ||||||||||| |||| ||||||||||| ||||||||||| || |||||| |    
T  19479607 ttcctataactctcattagtaagtgaatagttagtggaccttaattgccttgatcactcgcttactcatcttgtgtactataaatagggcttatattgta 19479508  T
Q  169 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttc 223  Q
    || ||||||||||||| | |||||||||||||||||| |||||||||||||||||    
T  19479507 ttgtaaagacacacttataaagagaataatacaaagttctttcatcttcttcttc 19479453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 69 - 232
Target Start/End: Complemental strand, 19783363 - 19783201
Alignment:
Q  69 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 168  Q
    |||||||||| | ||||| | ||||||||||||||||| |||||||   || |||||||||||| ||||||||||| ||||||||||  ||||||||| |    
T  19783363 ttcctataactctcattagtaagtgaatagttagtggaacttaattgctttcatcactcacttactcatcttgtgtactataaatagtgctcatattgta 19783264  T
Q  169 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttcttt 232  Q
    | | |||||||||||  ||||||||||||||||||||||||| ||||||| ||| |||||||||    
T  19783263 tgc-aaagacacactcttgaagagaataatacaaagtgcttttatcttctcctttctcttcttt 19783201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 17604690 - 17604821
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaata----gttagtggaccttaattatcttgatcactcacttatt 134  Q
    ||||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||||    ||||||||||||||||||| |||||||||||  ||||    
T  17604690 ttagtggatgtccatccttagtcttccaccttcctataacccccattagtgagtgaatatatagttagtggaccttaattattttgatcactcagctatt 17604789  T
Q  135 catcttgtgtcctataaataggactcatattg 166  Q
    ||| |||| || ||||||||||||||||||||    
T  17604790 cattttgtatcttataaataggactcatattg 17604821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 17604824 - 17604886
Alignment:
Q  141 gtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaa 203  Q
    |||||||||||||||| ||||||||| | | ||||  ||||||||||||||||||||||||||    
T  17604824 gtgtcctataaatagggctcatattgtagtgtaaatgcacacttgtgaagagaataatacaaa 17604886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 21575089 - 21575046
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataaccccc 82  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||||    
T  21575089 ttagtggatgtccatccttagtcttccaccttcctataaccccc 21575046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 35105030 - 35105122
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcactt 131  Q
    ||||||||| ||||||||||||||| ||| || | ||||| ||||| | ||| || || |||||||  |||||||||  ||||||| ||||||    
T  35105030 ttagtggatgtccatccttagtcttacaccttgcaataactcccataagtgaatggatggttagtgatccttaattactttgatcattcactt 35105122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 117 - 230
Target Start/End: Complemental strand, 8832646 - 8832533
Alignment:
Q  117 cttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatctt 216  Q
    |||||||||||||||| ||||||||||| |||||||||||  |||||||| |||  ||||||||| |  ||||||||||||||||||||| ||||||| |    
T  8832646 cttgatcactcacttactcatcttgtgtactataaatagggttcatattgtattgcaaagacacagtcttgaagagaataatacaaagtgatttcatcct 8832547  T
Q  217 cttcttcctcttct 230  Q
    || |||||||||||    
T  8832546 ctccttcctcttct 8832533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 105 - 236
Target Start/End: Original strand, 39875817 - 39875946
Alignment:
Q  105 gaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaag 204  Q
    ||||||||||  |||||||||||||||| ||||||||||| |||||||||   ||| ||||| |||  |||||||||||||||||||||  ||||||||     
T  39875817 gaccttaattgccttgatcactcacttactcatcttgtgtactataaataaagctcctattgtattgcaaagacacacttgtgaagaga--aatacaaat 39875914  T
Q  205 tgctttcatcttcttcttcctcttctttgatt 236  Q
    | |||||||||||||| |||| ||||| ||||    
T  39875915 tactttcatcttcttcctccttttcttagatt 39875946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 231
Target Start/End: Complemental strand, 44126823 - 44126710
Alignment:
Q  118 ttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaa-gacacacttgtgaagagaataatacaaagtgctttcatctt 216  Q
    ||||||| ||||||  |||| ||||||||||||||||||||  |||||| | | | || |||||||||||||||||||||||||||||| ||||||||||    
T  44126823 ttgatcattcacttgctcat-ttgtgtcctataaataggacctatattgtaatgtgaatgacacacttgtgaagagaataatacaaagtactttcatctt 44126725  T
Q  217 cttcttcctcttctt 231  Q
    |||||| ||||||||    
T  44126724 cttctttctcttctt 44126710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 161
Target Start/End: Complemental strand, 21587306 - 21587185
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 138  Q
    ||||||| | |||| ||||| |||| ||| |||||||||||||||||| |||  | || |||||||  |||||| |   ||||||| ||||||  ||||     
T  21587306 ttagtgggtgtccacccttaatcttccaccttcctataacccccattagtgaaagtatggttagtgatccttaactgctttgatcattcacttgctcat- 21587208  T
Q  139 ttgtgtcctataaataggactca 161  Q
    |||||||||||||||||||||||    
T  21587207 ttgtgtcctataaataggactca 21587185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 13921708 - 13921758
Alignment:
Q  179 acacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 231  Q
    ||||||||||||||||||| |||||  ||||||||| ||||||||||||||||    
T  13921708 acacttgtgaagagaataacacaaa--gctttcatcatcttcttcctcttctt 13921758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 155
Target Start/End: Complemental strand, 20458933 - 20458819
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 138  Q
    ||||||||| |||||||||| |||| ||| ||||||||| |||||||| ||| ||  | ||||||| ||||||| | | ||||||| ||||||  ||||     
T  20458933 ttagtggatgtccatccttaatcttccaccttcctataa-ccccattagtgaatgtttggttagtgaaccttaaatgttttgatcattcacttgctcat- 20458836  T
Q  139 ttgtgtcctataaatag 155  Q
    ||||| |||||||||||    
T  20458835 ttgtgacctataaatag 20458819  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 20463299 - 20463226
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaa 112  Q
    ||||||||| ||||| ||||||||| | | ||||||||| ||| |||| ||| || || |||||||||||||||    
T  20463299 ttagtggatgtccattcttagtcttcctccttcctataatccctattagtgaatgtatggttagtggaccttaa 20463226  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 7873918 - 7873835
Alignment:
Q  147 tataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 231  Q
    |||||||| ||||||| ||  | | |||| ||||| |||| ||||||||||||||||| ||||||||| || ||||| |||||||    
T  7873918 tataaataagactcatgttttaatgtaaaaacacatttgtaaagagaataatacaaag-gctttcatcatcgtcttcttcttctt 7873835  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 203
Target Start/End: Original strand, 19912279 - 19912443
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 138  Q
    ||||||||| |||| ||||| |||| ||| ||||||||||||| |||| ||| || || |||||| | ||||||||   ||||||||||||||  ||||     
T  19912279 ttagtggatgtccacccttaatcttccaccttcctataacccctattattgaatgtatggttagtagtccttaattgctttgatcactcacttgctcat- 19912377  T
Q  139 ttgtgtcctataaataggactcatatt-gaattctaaagacacacttgtgaagagaataatacaaa 203  Q
    ||||||||||||||||||||  |||||  |||   ||| | |||||||||||||||||||||||||    
T  19912378 ttgtgtcctataaataggacctatattataatgtaaaatatacacttgtgaagagaataatacaaa 19912443  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 34111131 - 34111054
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattat 116  Q
    ||||||||| |||||||||| || | ||| |||||||||| | ||||| |||||||||||||||||||||||||||||    
T  34111131 ttagtggatgtccatccttaatcatccaccttcctataactcgcattagtgagtgaatagttagtggaccttaattat 34111054  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 165
Target Start/End: Original strand, 45276354 - 45276475
Alignment:
Q  43 tggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgt 142  Q
    ||||| ||||||| |  |||| ||| ||||||||||||   ||| ||| || || |||||||| |||||||  | |||| || ||||||| |||| ||||    
T  45276354 tggatgtccatccctcatcttccaccttcctataacccatgttagtgaatgtatggttagtggtccttaatagttttgaccattcacttactcat-ttgt 45276452  T
Q  143 gtcctataaataggactcatatt 165  Q
    |||||||||||||||||||||||    
T  45276453 gtcctataaataggactcatatt 45276475  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 17909890 - 17909983
Alignment:
Q  140 tgtgtcctataaataggactcatattgaattctaaaga-cacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttcttt 232  Q
    |||||||||||||||||||| ||||   | | |||||| |||||||| ||||||||||||||||||| |||||||||||| ||||||| |||||    
T  17909890 tgtgtcctataaataggacttatatctcaatgtaaagaacacacttgagaagagaataatacaaagtactttcatcttctccttcctcatcttt 17909983  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 10739137 - 10739196
Alignment:
Q  172 taaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 231  Q
    |||||| | |||||||||||||||||||||||||||||||||||||| | | ||||||||    
T  10739137 taaagatatacttgtgaagagaataatacaaagtgctttcatcttctccattctcttctt 10739196  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 15007178 - 15007236
Alignment:
Q  172 taaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 231  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||    
T  15007178 taaagacacactggtgaagaga-taatacaaagtgctttcatcttctccttcctcatctt 15007236  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 36911983 - 36911928
Alignment:
Q  176 gacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 231  Q
    ||||||||| |||||||||||||| |||||| ||||| ||||||||||||||||||    
T  36911983 gacacacttctgaagagaataataaaaagtgttttcaccttcttcttcctcttctt 36911928  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 10734068 - 10734149
Alignment:
Q  139 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttc 220  Q
    |||| |||||||||||||||  | ||||   | |||||| | |||||||||||||||||||||||||| |||||||||||||    
T  10734068 ttgtatcctataaataggacctacattgtcatgtaaagatatacttgtgaagagaataatacaaagtgttttcatcttcttc 10734149  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 216
Target Start/End: Complemental strand, 12145764 - 12145639
Alignment:
Q  92 tgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaa-taggactcatattgaattctaaagacacacttgtgaag 190  Q
    ||||||||||||||  ||||||||  ||||||||||||||  |||| |||||||||||||| || ||||||| |   | | |||| |||||||| |||||    
T  12145764 tgaatagttagtggttcttaattactttgatcactcacttgctcattttgtgtcctataaaataagactcatttgttagtgtaaaaacacacttctgaag 12145665  T
Q  191 agaataatacaaagtgctttcatctt 216  Q
    || |||||||| |  |||||||||||    
T  12145664 aggataatacacaaagctttcatctt 12145639  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 23599986 - 23599934
Alignment:
Q  179 acacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 231  Q
    |||||| |||||||||||||||||| ||||||||||||||||||| |||||||    
T  23599986 acacttatgaagagaataatacaaaatgctttcatcttcttcttcatcttctt 23599934  T

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Target: scaffold0248 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 16258 - 16312
Alignment:
Q  177 acacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 231  Q
    |||||| |||||||| |||||||||||||||||| || || ||||||||||||||    
T  16258 acacacctgtgaagaaaataatacaaagtgcttttatatttttcttcctcttctt 16312  T

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