View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_377 (Length: 244)
Name: NF9264A_low_377
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_377 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 22 - 244
Target Start/End: Complemental strand, 46344765 - 46344543
Alignment:
| Q |
22 |
tggttttgtagcagcaatgggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtg |
121 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46344765 |
tggttttgtagcagcaatgggggtggaaatagcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtg |
46344666 |
T |
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| Q |
122 |
ttgttgtcacttgcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46344665 |
ttgttgtcacttgcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaa |
46344566 |
T |
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| Q |
222 |
gaattgctatgttgggtttgatt |
244 |
Q |
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||||||||||||||||||||||| |
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| T |
46344565 |
gaattgctatgttgggtttgatt |
46344543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 22 - 244
Target Start/End: Original strand, 46451791 - 46452013
Alignment:
| Q |
22 |
tggttttgtagcagcaatgggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtg |
121 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46451791 |
tggttttgtagcagcaatgggggtggaaatagcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtg |
46451890 |
T |
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| Q |
122 |
ttgttgtcacttgcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaa |
221 |
Q |
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| T |
46451891 |
ttgttgtcacttgcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaa |
46451990 |
T |
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| Q |
222 |
gaattgctatgttgggtttgatt |
244 |
Q |
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| T |
46451991 |
gaattgctatgttgggtttgatt |
46452013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 22 - 244
Target Start/End: Original strand, 46462759 - 46462981
Alignment:
| Q |
22 |
tggttttgtagcagcaatgggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtg |
121 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46462759 |
tggttttgtagcagcaatgggggtggaaatagcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtg |
46462858 |
T |
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| Q |
122 |
ttgttgtcacttgcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46462859 |
ttgttgtcacttgcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaa |
46462958 |
T |
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| Q |
222 |
gaattgctatgttgggtttgatt |
244 |
Q |
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||||||||||||||||||||||| |
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| T |
46462959 |
gaattgctatgttgggtttgatt |
46462981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 22 - 244
Target Start/End: Original strand, 46466181 - 46466403
Alignment:
| Q |
22 |
tggttttgtagcagcaatgggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtg |
121 |
Q |
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|||||||||| | ||||||||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
46466181 |
tggttttgtatctgcaatgggggtggaattagcaaaagggcagggtttgttcgatcaaatatctggtggtggaatcccatggttcttgtatacaagtgtg |
46466280 |
T |
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| Q |
122 |
ttgttgtcacttgcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaa |
221 |
Q |
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|||||| || ||||||||||| ||||||| || ||||||||||||||||||| |||||||||||| | ||||| ||| ||||||| || |||||||||| |
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| T |
46466281 |
ttgttgacagttgcttctttggttccattatttgaaggtgttagtgttgagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaa |
46466380 |
T |
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| Q |
222 |
gaattgctatgttgggtttgatt |
244 |
Q |
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||||||||||||||||||||||| |
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| T |
46466381 |
gaattgctatgttgggtttgatt |
46466403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 22 - 244
Target Start/End: Original strand, 46471386 - 46471608
Alignment:
| Q |
22 |
tggttttgtagcagcaatgggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtg |
121 |
Q |
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|||||||||| | ||||||||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
46471386 |
tggttttgtatctgcaatgggggtggaattagcaaaagggcagggtttgttcgatcaaatatctggtggtggaatcccatggttcttgtatacaagtgtg |
46471485 |
T |
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| Q |
122 |
ttgttgtcacttgcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaa |
221 |
Q |
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|||||| || ||||||||||| ||||||| || ||||||||||||||||||| |||||||||||| | ||||| ||| ||||||| || |||||||||| |
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| T |
46471486 |
ttgttgacagttgcttctttggttccattatttgaaggtgttagtgttgagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaa |
46471585 |
T |
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| Q |
222 |
gaattgctatgttgggtttgatt |
244 |
Q |
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||||||||||||||||||||||| |
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| T |
46471586 |
gaattgctatgttgggtttgatt |
46471608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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