View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9264A_low_380 (Length: 244)
Name: NF9264A_low_380
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_380 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 8 - 235
Target Start/End: Complemental strand, 48232050 - 48231823
Alignment:
| Q |
8 |
ccaacaatataaccatcaagatagtatgaaaaagtttgtattttcaatgtctgcatactgacatatatcaagaatgacccatttaagataaggttactgt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48232050 |
ccaacaatataaccatcaagatagtatgaaaaagtttgtattttcaatgtctgcatactgacatatatcaagaatgacccatttaagataaggttactgt |
48231951 |
T |
|
| Q |
108 |
aatacttgtgacatgggtcaaaggcaaaaagttagataatgcaggacactcactttcactttataattttgtctgtcccttggttttttagtttgagaat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48231950 |
aatacttgtgacatgggtcaaaggcaaaaagttagataatgcaggacactcactttcactttataattttgtctgtcccttggttttttagtttgagaat |
48231851 |
T |
|
| Q |
208 |
ttactataaggctccgatgatgtccatc |
235 |
Q |
| |
|
|| ||||||||||||||| |||| |||| |
|
|
| T |
48231850 |
ttgctataaggctccgataatgtacatc |
48231823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University