View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_404 (Length: 242)

Name: NF9264A_low_404
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_404
NF9264A_low_404
[»] chr4 (5 HSPs)
chr4 (87-225)||(37252927-37253065)
chr4 (90-224)||(37232684-37232815)
chr4 (99-178)||(37244881-37244960)
chr4 (94-224)||(37257059-37257198)
chr4 (182-224)||(37237700-37237742)
[»] chr6 (3 HSPs)
chr6 (93-177)||(14316682-14316766)
chr6 (93-178)||(14253954-14254039)
chr6 (93-172)||(14248144-14248223)
[»] scaffold0902 (1 HSPs)
scaffold0902 (93-170)||(3200-3277)
[»] scaffold1652 (1 HSPs)
scaffold1652 (92-167)||(595-670)
[»] scaffold1176 (1 HSPs)
scaffold1176 (93-172)||(371-450)
[»] scaffold1801 (1 HSPs)
scaffold1801 (131-171)||(268-308)


Alignment Details
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 87 - 225
Target Start/End: Original strand, 37252927 - 37253065
Alignment:
Q  87 ctcgagtaactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgttttcggaagg 186  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37252927 ctcgagtaactctctatagtatcaaagcggcggcgaaaaccactacagcagcagatccggcaacggtaaatctgttcaaagcggcaccgttttcggaagg 37253026  T
Q  187 tccttcagaaggaggagtggagatggatgatggagtaag 225  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  37253027 tccttcggaaggaggagtggaaatggatgatggagtaag 37253065  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 90 - 224
Target Start/End: Original strand, 37232684 - 37232815
Alignment:
Q  90 gagtaactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgttttcggaaggtcc 189  Q
    ||||||||||||| | |||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||   || ||| |    
T  37232684 gagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcgccgttt---gatggtgc 37232780  T
Q  190 ttcagaaggaggagtggagatggatgatggagtaa 224  Q
    ||||| ||||||||||||||| |||||||||||||    
T  37232781 ttcagcaggaggagtggagatcgatgatggagtaa 37232815  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 37244881 - 37244960
Alignment:
Q  99 tctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgttt 178  Q
    |||||| ||||||| | || ||||||||||| |||||||||||||||||||| || |||||||| |||||||||||||||    
T  37244881 tctatatcatcaaaacagcagcgaaaaccacaacagcagcagatccggcaacagtgaatctgttgaaagcggcgccgttt 37244960  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 224
Target Start/End: Original strand, 37257059 - 37257198
Alignment:
Q  94 aactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccg---ttttcggaaggtc-- 188  Q
    ||||||||| | ||||||||| |||||||||||||  |||||||||||||| |||||||| |||||||| ||||||||| ||   || || ||||||       
T  37257059 aactctctacatcatcaaagcagcggcgaaaaccataacagcagcagatccagcaacggtgaatctgttaaaagcggcggcggagttgtctgaaggtgaa 37257158  T
Q  189 ----cttcagaaggaggagtggagatggatgatggagtaa 224  Q
        |||||||||||| ||| |||||||||||||||||||    
T  37257159 ggtgcttcagaaggagtagtagagatggatgatggagtaa 37257198  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 37237700 - 37237742
Alignment:
Q  182 gaaggtccttcagaaggaggagtggagatggatgatggagtaa 224  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  37237700 gaaggtgcttcagaaggaggagtagagatggatgatggagtaa 37237742  T

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Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 14316682 - 14316766
Alignment:
Q  93 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgtt 177  Q
    |||||||||| | ||||||||| || ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||    
T  14316682 taactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccggcaagggtaaatctgttcaaagcggcgtcgtt 14316766  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 14253954 - 14254039
Alignment:
Q  93 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgttt 178  Q
    |||||||||| | ||||||||| || ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |||||    
T  14253954 taactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccagcaactgtaaatctgttcaaagcggcgtcgttt 14254039  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 14248144 - 14248223
Alignment:
Q  93 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcg 172  Q
    |||||||||| | ||||||||| ||  | |||||||| ||||||| |||||||||||| |||||||||||||||||||||    
T  14248144 taactctctacatcatcaaagcagcaacaaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcg 14248223  T

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Target: scaffold0902 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 3200 - 3277
Alignment:
Q  93 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcgg 170  Q
    |||||||||| | ||||||||| || | ||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  3200 taactctctacatcatcaaagcagccgtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcgg 3277  T

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Target: scaffold1652 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 670 - 595
Alignment:
Q  92 gtaactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaag 167  Q
    ||||||||||| | ||||||||| || | ||||||||| |||||||||||||||||||| ||||||||||||||||    
T  670 gtaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaag 595  T

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Target: scaffold1176 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 450 - 371
Alignment:
Q  93 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcg 172  Q
    |||||||||| | ||||||||| ||   ||||||||| ||||||| |||||||||||| |||||||||||||||||||||    
T  450 taactctctacatcatcaaagcagcaatgaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcg 371  T

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Target: scaffold1801 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 308 - 268
Alignment:
Q  131 acagcagcagatccggcaacggtaaatctgttcaaagcggc 171  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  308 acagcagcagatccggcaactgtaaatctgttcaaagcggc 268  T

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