View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_409 (Length: 241)
Name: NF9264A_low_409
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_409 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 6916068 - 6915846
Alignment:
| Q |
19 |
aagtggttcaatatatccaatcactcgtccatattgtccttgtcctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttct |
118 |
Q |
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| T |
6916068 |
aagtggttcaatatatccaatcactcgtccatattgtccttgccctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttct |
6915969 |
T |
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| Q |
119 |
ctgaagtttacccggggctttccaactgtagcatcaacaccatactccatcttaatgcatttaacataaatatctaagtgtagttctcccattccagaaa |
218 |
Q |
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| T |
6915968 |
ctgaagtttacccggggctttccaactgtagcatcaaccccatactccatcttaatgcgtttaacataaatatctaagtgtagttctcccattccagaaa |
6915869 |
T |
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| Q |
219 |
tgattgtttgcccactctctggg |
241 |
Q |
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| T |
6915868 |
tgattgtttgcccactctctggg |
6915846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 35 - 156
Target Start/End: Original strand, 15039269 - 15039390
Alignment:
| Q |
35 |
ccaatcactcgtccatattgtccttgtcctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggg |
134 |
Q |
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|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15039269 |
ccaatcacccgtccatattgtccttgccctccggattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacacggg |
15039368 |
T |
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| Q |
135 |
gctttccaactgtagcatcaac |
156 |
Q |
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| T |
15039369 |
gctttccaactgtagcatcaac |
15039390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 15039923 - 15039977
Alignment:
| Q |
171 |
taatgcatttaacataaatatctaagtgtagttctcccattccagaaatgattgt |
225 |
Q |
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| T |
15039923 |
taatgcgttcaacatagatatctaagtgcagttctcccattccagaaataattgt |
15039977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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