View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_410 (Length: 241)
Name: NF9264A_low_410
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_410 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 106 - 241
Target Start/End: Original strand, 34851473 - 34851608
Alignment:
| Q |
106 |
tctcatcctttttcagccctcgtttaagtacctgagaaatttattatatccttcctagaaaaatattcaaatatcttgtaaatgatgagatctaatgaaa |
205 |
Q |
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| T |
34851473 |
tctcatcctttttaagccctcgtttaattacctgaggaatttattatatccttcctagaaaaatattcaaatatcttgtaaatgatgagatctaatgaaa |
34851572 |
T |
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| Q |
206 |
tgtttgaaacatacttactaactcaattaaattcta |
241 |
Q |
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| T |
34851573 |
tgtttgaaacttacttaataactaaattaaattcta |
34851608 |
T |
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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 34851400 - 34851485
Alignment:
| Q |
5 |
actatggtgttcaagaaaattattccccaagaaaaaggaccactgaaccccaccatgttgtgagtgccatcattctcatccttttt |
90 |
Q |
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| T |
34851400 |
actatggtggtcaagaaaattattccccaagaaacaggaccactgaaccccaccatgttgtgagtgccatcattctcatccttttt |
34851485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 3511619 - 3511696
Alignment:
| Q |
135 |
acctgagaaatttattatatccttcctagaaaa-atattcaaatatcttgtaaatgatgagatctaatgaaatgtttg |
211 |
Q |
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| T |
3511619 |
acctgaggaatttattatatccttcctagaaaacatatacaaacatcttataaatggtgagatctaattaaatgtttg |
3511696 |
T |
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