View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_432 (Length: 238)
Name: NF9264A_low_432
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_432 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0703 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 54423862 - 54423641
Alignment:
| Q |
17 |
ctaaggtcctggtcaatcgtcttcgtccacttattaacaaatgaattttccaagaacaggcagcctttgtgcattctcgctcaatcatggatactgcgct |
116 |
Q |
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| T |
54423862 |
ctaaggtcctggtcaatcgtcttcgtccacttattaacaaatggatttcccaagaacaggcagcctttgtgcattctcgctcaatcatggataatgcgct |
54423763 |
T |
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| Q |
117 |
aacagcattagaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgta |
216 |
Q |
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| T |
54423762 |
aacagcattcgaagttcttcatcatatgcgctgcaaaacaaaagaaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgta |
54423663 |
T |
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| Q |
217 |
aactggtcgtacctcaaagcta |
238 |
Q |
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| T |
54423662 |
aattggtcgtacctcaaagcta |
54423641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 81 - 234
Target Start/End: Original strand, 20127319 - 20127472
Alignment:
| Q |
81 |
ctttgtgcattctcgctcaatcatggatactgcgctaacagcattagaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggct |
180 |
Q |
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| T |
20127319 |
ctttgtgcattctcgctcaatcatggataatgcgctaaccgcttttgaagtcctccatcatatgcgctgcaaaacaaaagggaaaataggcgaggtggca |
20127418 |
T |
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| Q |
181 |
ctcaaacttgacatatccaaggcattcgatagtgtaaactggtcgtacctcaaa |
234 |
Q |
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| T |
20127419 |
ctaaaacttgatatatccaaggcatttgatagtgtaagttggccttacctcaaa |
20127472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 238
Target Start/End: Complemental strand, 27645764 - 27645596
Alignment:
| Q |
70 |
gaacaggcagcctttgtgcattctcgctcaatcatggatactgcgctaacagcattagaagttcttcatcatatgcgctgcaaaacaaaaggaaaaatag |
169 |
Q |
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| T |
27645764 |
gaacaggcagcattcgttcactcccgctctatcatggataatgctttaacggcctttgaaatcttacatcatatgcgctgcaaaaccaaaggtaaaattg |
27645665 |
T |
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| Q |
170 |
gtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaactggtcgtacctcaaagcta |
238 |
Q |
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| T |
27645664 |
gtgaggtggctctgaaacttgatatctctaaggcttttgatagtgttagctggttgtaccttaaagcta |
27645596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 12461121 - 12461036
Alignment:
| Q |
139 |
catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaactggtc |
224 |
Q |
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| T |
12461121 |
catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgatatatccaaagcatttgacagtgtcagctggtc |
12461036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 20120986 - 20121056
Alignment:
| Q |
17 |
ctaaggtcctggtcaatcgtcttcgtccacttattaacaaatgaattttccaagaacaggcagcctttgtg |
87 |
Q |
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| T |
20120986 |
ctaaggtccttgccaatcgtctccatccattaatcaacaaatggatttcccaagaacaagcagcctttgtg |
20121056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 224
Target Start/End: Complemental strand, 9183133 - 9182985
Alignment:
| Q |
76 |
gcagcctttgtgcattctcgctcaatcatggatactgcgctaacagcattagaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg |
175 |
Q |
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| T |
9183133 |
gcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaattctacattatatgcgctgcaagaataaaggaaaacaaggtgatg |
9183034 |
T |
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| Q |
176 |
tggctctcaaacttgacatatccaaggcattcgatagtgtaaactggtc |
224 |
Q |
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| T |
9183033 |
tagctctaaaacttgacatttcgaaggcttttgatagtgttagctggtc |
9182985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 224
Target Start/End: Original strand, 11625140 - 11625288
Alignment:
| Q |
76 |
gcagcctttgtgcattctcgctcaatcatggatactgcgctaacagcattagaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg |
175 |
Q |
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| T |
11625140 |
gcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaatactacattatatgcgctgcaagaataaaggaaaaaaaggtgatg |
11625239 |
T |
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| Q |
176 |
tggctctcaaacttgacatatccaaggcattcgatagtgtaaactggtc |
224 |
Q |
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| T |
11625240 |
tagctctaaaacttgacatttcgaaggcttttgatagtgttagctggtc |
11625288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 224
Target Start/End: Complemental strand, 10161356 - 10161208
Alignment:
| Q |
76 |
gcagcctttgtgcattctcgctcaatcatggatactgcgctaacagcattagaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg |
175 |
Q |
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| T |
10161356 |
gcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaattctacattatatgcgctgcaagaataaaggaaaacaaggtgatg |
10161257 |
T |
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| Q |
176 |
tggctctcaaacttgacatatccaaggcattcgatagtgtaaactggtc |
224 |
Q |
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| T |
10161256 |
tagctctaaaacttgacatttcgaaggcttttgatagtgttagctggtc |
10161208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 16860983 - 16861068
Alignment:
| Q |
139 |
catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaactggtc |
224 |
Q |
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| T |
16860983 |
catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgacatatccaaagcatttgacagtgtcagctggtc |
16861068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0703 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0703
Description:
Target: scaffold0703; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 2013 - 1928
Alignment:
| Q |
139 |
catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaactggtc |
224 |
Q |
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| T |
2013 |
catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgatatatccaaagcatttgacagtgtcagctggtc |
1928 |
T |
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