View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_433 (Length: 238)
Name: NF9264A_low_433
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_433 |
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Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 98 - 226
Target Start/End: Original strand, 38930669 - 38930797
Alignment:
| Q |
98 |
tgtaattaatactttgttctttatgtacgcacttcttgtgcataggagaacatttgtgtggttaatatattttattttggtttgttnnnnnnnntaatat |
197 |
Q |
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| T |
38930669 |
tgtaattaatactttgttctttatgtacacacttcttgtgcataggagaacatttgtgtggttaatatattttattttggtttattaaaaaaaaaaatat |
38930768 |
T |
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| Q |
198 |
aggcttagtatacaaccttaaccttgatg |
226 |
Q |
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| T |
38930769 |
aggcttagtatacaaccttaaccttgatg |
38930797 |
T |
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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 38930200 - 38930295
Alignment:
| Q |
1 |
acatgttcaccataatcttaaagtatcgatagagtatacaaatcctctcaagtatgttgaactaaacagttttatcataagcagaactcttattta |
96 |
Q |
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|||| ||||||| |||||||||||||||||||||||||| |||||||||||| |||| |||||||||| |||||||| |||||||||||||||||| |
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| T |
38930200 |
acattttcaccaaaatcttaaagtatcgatagagtatacgaatcctctcaagcatgtggaactaaacatttttatcaaaagcagaactcttattta |
38930295 |
T |
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