View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_435 (Length: 237)

Name: NF9264A_low_435
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_435
NF9264A_low_435
[»] chr3 (4 HSPs)
chr3 (157-237)||(7779307-7779387)
chr3 (18-63)||(7779169-7779214)
chr3 (158-233)||(8713718-8713794)
chr3 (158-233)||(9065605-9065681)
[»] chr1 (2 HSPs)
chr1 (157-227)||(25664714-25664784)
chr1 (157-226)||(25132538-25132608)
[»] chr8 (1 HSPs)
chr8 (171-227)||(13581725-13581781)


Alignment Details
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 7779307 - 7779387
Alignment:
Q  157 cttacctaacctagcctaattattgacaaaataaactctattgattactttgtcgaaatatcaagaatccccaacaacaac 237  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||    
T  7779307 cttacctaacctagcctaattattgacaaaataaattctattgattaccttgtcgaaatatcaacaatccccaacaacaac 7779387  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 7779169 - 7779214
Alignment:
Q  18 gggagctatgtgttaacacaattaaaagtgaggatagaaggacgtg 63  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  7779169 gggagctatttgttaacacaattaaaagtgaggatagaaggacgtg 7779214  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 8713718 - 8713794
Alignment:
Q  158 ttacctaacctagcctaattattgac-aaaataaactctattgattactttgtcgaaatatcaagaatccccaacaa 233  Q
    |||||||||||| |||||||| | || |||||||| ||||  |||||| |||||| |||||||| ||||||| ||||    
T  8713718 ttacctaacctaacctaattactcacaaaaataaattctaccgattaccttgtcgtaatatcaacaatccccgacaa 8713794  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 9065605 - 9065681
Alignment:
Q  158 ttacctaacctagcctaattattgac-aaaataaactctattgattactttgtcgaaatatcaagaatccccaacaa 233  Q
    |||||||||||| |||||||| | || |||||||| ||||  |||||| |||||| |||||||| ||||||| ||||    
T  9065605 ttacctaacctaacctaattactcacaaaaataaattctaccgattaccttgtcgtaatatcaacaatccccgacaa 9065681  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 25664714 - 25664784
Alignment:
Q  157 cttacctaacctagcctaattattgacaaaataaactctattgattactttgtcgaaatatcaagaatccc 227  Q
    |||||||||||||  ||||||||| |||||||||| ||||  |||||| ||||||||||||||| ||||||    
T  25664714 cttacctaacctaagctaattattcacaaaataaattctaccgattaccttgtcgaaatatcaacaatccc 25664784  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 25132538 - 25132608
Alignment:
Q  157 cttacctaacctagcctaattattgac-aaaataaactctattgattactttgtcgaaatatcaagaatcc 226  Q
    |||||||||||||  ||||||||| || |||||||| |||| ||||||| |||| |||||||||| |||||    
T  25132538 cttacctaacctaaactaattattcacaaaaataaattctactgattaccttgttgaaatatcaacaatcc 25132608  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 13581725 - 13581781
Alignment:
Q  171 cctaattattgacaaaataaactctattgattactttgtcgaaatatcaagaatccc 227  Q
    |||||||||| |||||||||| |||||||||||  || |||||||||||| ||||||    
T  13581725 cctaattattcacaaaataaattctattgattaacttttcgaaatatcaacaatccc 13581781  T

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