View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9264A_low_436 (Length: 236)
Name: NF9264A_low_436
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_436 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 23915348 - 23915210
Alignment:
| Q |
15 |
aagaatattaatggtgaatgaatttctttctgactacattcattgacttattttgactgagtgaagtcctt-nnnnnnnggtactgcatcataatgccta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
23915348 |
aagaatattaatggtgaatgaatttctttctgactacattcattgacttattttgactgagtgaagtccttaaaaaaaaggtactgcattataatgccta |
23915249 |
T |
|
| Q |
114 |
taaattaagaaccctaagtaacgtctcttcttcattctcctca |
156 |
Q |
| |
|
|||||||||||||| |||||||| |||| ||||||||||| |
|
|
| T |
23915248 |
taaattaagaaccc----taacgtctattctccattctcctca |
23915210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 23915185 - 23915125
Alignment:
| Q |
158 |
aagagaaaatggcatcttcaacttatttatccattttgctcaccatttcaatgatctttat |
218 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23915185 |
aagagaaaatggcatcttcaacctatttatccattttgctcaccatttcaatgatctttat |
23915125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 23922834 - 23922776
Alignment:
| Q |
158 |
aagagaaaatggcatcttcaacttatttatccattttgctcaccatttcaatgatcttt |
216 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23922834 |
aagagaaaatggcatcttcagcctatttatccattttgctcaccatttcaatgatcttt |
23922776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 23922935 - 23922872
Alignment:
| Q |
93 |
ggtactgcatcataatgcctataaattaagaaccctaagtaacgtctcttcttcattctcctca |
156 |
Q |
| |
|
|||||| ||| |||||||||||| |||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
23922935 |
ggtactacattataatgcctatatattaagaaccctaagtaacgtctcttctccactctcctca |
23922872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 23923014 - 23922954
Alignment:
| Q |
15 |
aagaatattaatggtgaatgaatttctttctgactacattcattgacttattttgactgag |
75 |
Q |
| |
|
||||||||||||||||| | |||| |||||||||||||||||| ||| ||||||| |||| |
|
|
| T |
23923014 |
aagaatattaatggtgactttatttgtttctgactacattcattaactcattttgattgag |
23922954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 25803278 - 25803226
Alignment:
| Q |
166 |
atggcatcttcaacttatttatccattttgctcaccatttcaatgatctttat |
218 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
25803278 |
atggcaccttcaacatatttatcatttttgctcaccatttcaatgatgtttat |
25803226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University