View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_440 (Length: 235)
Name: NF9264A_low_440
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_440 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 44840101 - 44839904
Alignment:
| Q |
19 |
aatataatggatgctaaatagttaaaaaattccctgtcaaacaaaggcaagctacagagaaagttgttcaaattgcatctaaactgaaatcatcttttat |
118 |
Q |
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| T |
44840101 |
aatataatggatgctaaatagttaaaaaattccctgtcaaacaaaggcaagctacagagaaagttgttcaaattgcatctaaactgaaatcatcttttat |
44840002 |
T |
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| Q |
119 |
acagccatcttttactgatccatacccttaacataaaaataagcaattaaaagtgcttgagaaacatgttaaagagcgtaaaatttactgtaatactt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44840001 |
acagccatcttttactgatccatacccttaacataaaaataagcaattaaaagtgcttgagaaacatgttaaagagcgtaaaatttactgtaatactt |
44839904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 44900501 - 44900401
Alignment:
| Q |
19 |
aatataatggatgctaaatagttaaaaaattccctgtcaaacaaaggcaagctacagagaaagttgttcaaattgcatctaaactgaaatcatcttttat |
118 |
Q |
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|||| |||||| |||||||||||| || |||||| |||| |||| || | | | |||| |||||||| ||||||||||||||||| ||||||||||||| |
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| T |
44900501 |
aataaaatggaagctaaatagttacaattttccctttcaagcaaatgccatcaaaagaggaagttgtttaaattgcatctaaactgcaatcatcttttat |
44900402 |
T |
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| Q |
119 |
a |
119 |
Q |
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| T |
44900401 |
a |
44900401 |
T |
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