View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_441 (Length: 235)
Name: NF9264A_low_441
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_441 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 35742830 - 35742596
Alignment:
| Q |
1 |
agagtacgaagatctcgaagatcacgaatatccagtaacttataaaagtatcacggatgttctcatgcagcaccaagggccgatagataagtttggtctt |
100 |
Q |
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| T |
35742830 |
agagtacgaggatctcgaagatctcgaagatccagtaacttatagaattatcacggatgttctcatgcagcaccaagggccgatagataagtttggtctt |
35742731 |
T |
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| Q |
101 |
ttcatatctaatgactacaaatttgagatcacaattgaacacctcgataagtggattccgatttggtcagagaggaatattaaacatctcgagcttgtga |
200 |
Q |
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| T |
35742730 |
ttcatatctaatgactacaaatttgagatcacaattgaacacctcgataagtggattccgattttgtcagagaggaatattaaacatctcgagcttgtga |
35742631 |
T |
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| Q |
201 |
accacgaaacacatcccgatcaaatgctatatatt |
235 |
Q |
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| T |
35742630 |
accacgaaacacatcccgatcaaatgctatatatt |
35742596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 233
Target Start/End: Complemental strand, 35749146 - 35748963
Alignment:
| Q |
50 |
atcacggatgttctcatgcagcaccaagggccgatagataagtttggtcttttcatatctaatgactacaaatttgagatcacaattgaacacctcgata |
149 |
Q |
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||||| |||||||| ||||| ||| | || |||||| |||||||| |||||||||| || |||||||||| || |||||| ||||||| |||| || |
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| T |
35749146 |
atcacagatgttcttatgcaacacaacggtccgatacataagtttcatcttttcataccttatgactacaatttcaagatcataattgaattcctcagta |
35749047 |
T |
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| Q |
150 |
agtggattccgatttggtcagagaggaatattaaacatctcgagcttgtgaaccacgaaacacatcccgatcaaatgctatata |
233 |
Q |
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| T |
35749046 |
cgtggattccgttcttgtctaggagggatattaaacatctcgagcttttgaactacggaacacatgtcgatcaaatgccatata |
35748963 |
T |
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