View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_442 (Length: 235)
Name: NF9264A_low_442
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_442 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 31658979 - 31658755
Alignment:
| Q |
11 |
atggacatcacacttgcaaaagttatttgcattcagatataaatttggaatccattgtgtcatcaaatgactcttctatattactcagttttgatagcaa |
110 |
Q |
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| T |
31658979 |
atggccatcacacttgcaaaagttatttgcattcagatataaatttggaatccattttgtcatcaaatgactcttctatattacttagttttgataacaa |
31658880 |
T |
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| Q |
111 |
cattccaattaaagaagaaaactcgtttccaccatcaccattgccatttcttgcatctacaatagaggatcctaaggaagagattcatgatgattattct |
210 |
Q |
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| T |
31658879 |
cattccaattaaagaagaaaactcgtttccaccatcaccattgccatttcttgcatctacaaaagaggatcctaaggaagagattcatgatgattattct |
31658780 |
T |
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| Q |
211 |
tataaaaatcaattgttctcatcag |
235 |
Q |
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| T |
31658779 |
tctcaaaatcaattgttctcatcag |
31658755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 31657244 - 31657342
Alignment:
| Q |
16 |
catcacacttgcaaaagttatttgcattcagatataaatttggaatccattgtgtcatcaaatgactcttctatattactcagttttgatagcaacatt |
114 |
Q |
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| T |
31657244 |
catcacacttgcaaaagctcttaccattcagacataaaattggaatccattttgtgctacgatgactcttctatattacttagtttcgataacaacatt |
31657342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 231
Target Start/End: Original strand, 31650372 - 31650457
Alignment:
| Q |
146 |
caccattgccatttcttgcatctacaatagaggatcctaaggaagagattcatgatgattattcttataaaaatcaattgttctca |
231 |
Q |
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| T |
31650372 |
caccattgccacttcttgcatctacaaaaggagatcccaaggaagagatacatcatgatcattttcctcaaaaccaattgttctca |
31650457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 31657390 - 31657434
Alignment:
| Q |
150 |
attgccatttcttgcatctacaatagaggatcctaaggaagagat |
194 |
Q |
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| T |
31657390 |
attgccacttcttgcatctacaaaagaggaacccaaggaagagat |
31657434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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