View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_444 (Length: 234)

Name: NF9264A_low_444
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_444
NF9264A_low_444
[»] scaffold1643 (1 HSPs)
scaffold1643 (101-231)||(112-242)
[»] chr3 (37 HSPs)
chr3 (101-231)||(6733616-6733746)
chr3 (101-231)||(6945210-6945340)
chr3 (101-231)||(6556675-6556805)
chr3 (101-201)||(6841558-6841658)
chr3 (101-213)||(7585813-7585925)
chr3 (101-231)||(6523443-6523573)
chr3 (104-200)||(6481974-6482070)
chr3 (101-201)||(6781947-6782047)
chr3 (101-201)||(6941878-6941978)
chr3 (101-212)||(6782308-6782419)
chr3 (145-213)||(6450770-6450838)
chr3 (145-213)||(6730698-6730766)
chr3 (101-198)||(4390906-4391003)
chr3 (100-192)||(5296683-5296775)
chr3 (7-104)||(6944852-6944950)
chr3 (101-178)||(6593366-6593443)
chr3 (101-178)||(6880455-6880532)
chr3 (101-178)||(6898027-6898104)
chr3 (101-213)||(8469502-8469614)
chr3 (101-213)||(8587865-8587977)
chr3 (154-201)||(6530509-6530556)
chr3 (119-178)||(6724092-6724151)
chr3 (101-178)||(7747941-7748018)
chr3 (142-231)||(8570909-8570998)
chr3 (142-198)||(5266062-5266118)
chr3 (111-175)||(6243266-6243330)
chr3 (111-175)||(6263631-6263695)
chr3 (101-180)||(5261877-5261956)
chr3 (111-178)||(6235996-6236063)
chr3 (7-70)||(6523993-6524057)
chr3 (143-177)||(6915082-6915116)
chr3 (7-53)||(6841958-6842006)
chr3 (111-175)||(6140235-6140299)
chr3 (111-175)||(6166846-6166910)
chr3 (111-175)||(6257151-6257215)
chr3 (111-175)||(13275420-13275484)
chr3 (143-198)||(5248158-5248213)
[»] scaffold0425 (3 HSPs)
scaffold0425 (101-201)||(9753-9853)
scaffold0425 (7-104)||(10113-10211)
scaffold0425 (119-177)||(13548-13606)
[»] scaffold2053 (1 HSPs)
scaffold2053 (146-202)||(245-301)
[»] scaffold0958 (1 HSPs)
scaffold0958 (142-231)||(1752-1841)


Alignment Details
Target: scaffold1643 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 112 - 242
Alignment:
Q  101 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 200  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||    
T  112 gactccacgttttcaaactcatcactaacttcaaattgatacagagaattgagttggaacaaactccactcctctctcgaaccaatcagtcttgggcaat 211  T
Q  201 tcaatattccaagttggctcatgttggaagg 231  Q
    |  |||||||||| |  |||| |||||||||    
T  212 tgtatattccaaggtccctcaagttggaagg 242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 6733616 - 6733746
Alignment:
Q  101 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 200  Q
    |||||||||||||||||||||||||| ||||  |||  |||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6733616 gactccacgttttcaaactcatcactgacaaagaatgaatacaaggaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaat 6733715  T
Q  201 tcaatattccaagttggctcatgttggaagg 231  Q
    |   |||||||||  |||||| |||||||||    
T  6733716 tgtgtattccaaggaggctcaagttggaagg 6733746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 6945210 - 6945340
Alignment:
Q  101 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 200  Q
    |||||||||||||||||||||||||||||||  |||| |   |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  6945210 gactccacgttttcaaactcatcactaacaacgaattcaatgagagaattgagttggaacaaaccccactcctctcttgaaccaatcagttttgggcaat 6945309  T
Q  201 tcaatattccaagttggctcatgttggaagg 231  Q
    |  ||||| ||||||  |||| |||||||||    
T  6945310 tgtatattacaagttccctcaagttggaagg 6945340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 6556805 - 6556675
Alignment:
Q  101 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 200  Q
    ||||||||||||||||||||||||  |||| | ||    | ||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6556805 gactccacgttttcaaactcatcagcaacagtgaaacatttcaaggaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaat 6556706  T
Q  201 tcaatattccaagttggctcatgttggaagg 231  Q
    |  |||||||||||||  ||| |||||||||    
T  6556705 tgtatattccaagttgtatcaagttggaagg 6556675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 6841658 - 6841558
Alignment:
Q  101 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 200  Q
    |||||||||||||||||||||||||||||| | ||    | ||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6841658 gactccacgttttcaaactcatcactaacactgaaccatttcaaggaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaat 6841559  T
Q  201 t 201  Q
    |    
T  6841558 t 6841558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 7585813 - 7585925
Alignment:
Q  101 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 200  Q
    ||||||||||||||||||||||||||||||   ||      ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  7585813 gactccacgttttcaaactcatcactaacaccgaaagctctcagagaattgagttggaacaaaccccactgctctctcaaagcaatcagttttgggcaat 7585912  T
Q  201 tcaatattccaag 213  Q
    |  ||||||||||    
T  7585913 tgtatattccaag 7585925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 6523573 - 6523443
Alignment:
Q  101 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 200  Q
    |||||||||||||||||||||||||||||||  || |    ||  ||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||    
T  6523573 gactccacgttttcaaactcatcactaacaaagaaatatctcaaggaattgagttggaacaacccccactcctctctcgaaccaatcagtcttgggcaat 6523474  T
Q  201 tcaatattccaagttggctcatgttggaagg 231  Q
    |  |||||||||| |  |||| |||||||||    
T  6523473 tgtatattccaaggtccctcaagttggaagg 6523443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 104 - 200
Target Start/End: Complemental strand, 6482070 - 6481974
Alignment:
Q  104 tccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 200  Q
    ||||||||||||||||||||||||||  |||| |  | |||||||||||||||||||||||||||||| |||||  || ||||||||||||||||||    
T  6482070 tccacgttttcaaactcatcactaactctaaactctttcagagaattgagttggaacaaaccccactcttctcttgaagcaatcagttttgggcaat 6481974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 6782047 - 6781947
Alignment:
Q  101 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 200  Q
    |||||||| |||||||||||||||||||||   ||||   |||  ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6782047 gactccacattttcaaactcatcactaacagagaattctaacaaggaactgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaat 6781948  T
Q  201 t 201  Q
    |    
T  6781947 t 6781947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 101 - 201
Target Start/End: Original strand, 6941878 - 6941978
Alignment:
Q  101 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 200  Q
    |||||||| |||||||||||||||||||||   ||||   |||  ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6941878 gactccacattttcaaactcatcactaacagagaattctaacaaggaactgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaat 6941977  T
Q  201 t 201  Q
    |    
T  6941978 t 6941978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 101 - 212
Target Start/End: Complemental strand, 6782419 - 6782308
Alignment:
Q  101 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 200  Q
    |||||||||||||||||||||||| ||||||  ||    | ||  ||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  6782419 gactccacgttttcaaactcatcagtaacaaagaaagatttcaaggaattgagttggaacaaaccccactcctctcttgaaccaatcagttttgggcaat 6782320  T
Q  201 tcaatattccaa 212  Q
    |  |||||||||    
T  6782319 tatatattccaa 6782308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 6450838 - 6450770
Alignment:
Q  145 agaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaattcaatattccaag 213  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||    
T  6450838 agaattgagttggaacaaaccccactcctctctcgaagcaatcagttttgggcaattccatattacaag 6450770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 6730766 - 6730698
Alignment:
Q  145 agaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaattcaatattccaag 213  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||    
T  6730766 agaattgagttggaacaaaccccactcctctctcgaagcaatcagttttgggcaattccatattacaag 6730698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 101 - 198
Target Start/End: Complemental strand, 4391003 - 4390906
Alignment:
Q  101 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggca 198  Q
    |||||||| |||||||| ||||||| |||||| || |  |  |||||||||||||||||||||||||||||| |||||||| |||| |||||||||||    
T  4391003 gactccacattttcaaagtcatcaccaacaatgaaatcttttagagaattgagttggaacaaaccccactcccctctcaaagcaattagttttgggca 4390906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 5296683 - 5296775
Alignment:
Q  100 tgactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttt 192  Q
    |||||||| ||||||||| ||||| |||||||| ||||  | ||||||||||||||||||||| ||||||| ||||||| || | ||||||||    
T  5296683 tgactccatgttttcaaagtcatcgctaacaatgaattctttcagagaattgagttggaacaacccccacttctctctcgaagctatcagttt 5296775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 6944852 - 6944950
Alignment:
Q  7 atgtgggacccataacttggtcttgctagcac--tgtggcgatgcaaattaactttcattgctgccaaatgtggtcaatctccacattcgggatgtgact 104  Q
    ||||||||||||||||||| ||||||||||||  ||||||| ||| ||||||| |||||| || | |||||| |||||||  ||||||||||||||||||    
T  6944852 atgtgggacccataacttgttcttgctagcactatgtggcggtgc-aattaaccttcattccttctaaatgtcgtcaatccacacattcgggatgtgact 6944950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 6593443 - 6593366
Alignment:
Q  101 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctc 178  Q
    ||||||| | ||| ||| |||||||||||| | ||||| | |||||||| ||||||||||||||||||||||||||||    
T  6593443 gactccaagatttgaaaatcatcactaacactgaattgtttcagagaatcgagttggaacaaaccccactcctctctc 6593366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 6880455 - 6880532
Alignment:
Q  101 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctc 178  Q
    ||||||| | |||| || ||||||| |||| | ||||| | |||||||||||||||||||||||||||||||||||||    
T  6880455 gactccaagatttccaaatcatcaccaacactgaattgtttcagagaattgagttggaacaaaccccactcctctctc 6880532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 6898027 - 6898104
Alignment:
Q  101 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctc 178  Q
    ||||||| | ||||||| |||||||| ||| | || || | |||||||||||||||||||||||||||||||||||||    
T  6898027 gactccaagatttcaaaatcatcacttacactgaactgtttcagagaattgagttggaacaaaccccactcctctctc 6898104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 8469502 - 8469614
Alignment:
Q  101 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 200  Q
    ||||| ||||||||||||||||| |||||||  |||   | ||  |||||||||  ||||||||||||||||| ||||||| |||||| || ||||||||    
T  8469502 gactctacgttttcaaactcatcgctaacaaagaatgatttcaaggaattgagtctgaacaaaccccactcctgtctcaaagcaatcaattctgggcaat 8469601  T
Q  201 tcaatattccaag 213  Q
    || ||||| ||||    
T  8469602 tccatattacaag 8469614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 8587865 - 8587977
Alignment:
Q  101 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 200  Q
    |||||||||||||||||||||||||||||  | ||    |  |||||||||||||||||||||||||| | ||||||| || |||||||||| || ||||    
T  8587865 gactccacgttttcaaactcatcactaactttgaaagattttagagaattgagttggaacaaaccccattgctctctcgaagcaatcagtttaggacaat 8587964  T
Q  201 tcaatattccaag 213  Q
      |||||| ||||    
T  8587965 cgaatattacaag 8587977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 6530556 - 6530509
Alignment:
Q  154 ttggaacaaaccccactcctctctcaaaccaatcagttttgggcaatt 201  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||    
T  6530556 ttggaacagaccccactcctctctcgaaccaatcagttttgggcaatt 6530509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 6724151 - 6724092
Alignment:
Q  119 tcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctc 178  Q
    |||||||||||| | ||||| | |||||||| ||||||||||||||||||||||||||||    
T  6724151 tcatcactaacactgaattgtttcagagaatcgagttggaacaaaccccactcctctctc 6724092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 7747941 - 7748018
Alignment:
Q  101 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctc 178  Q
    ||||||| | ||||||| ||||||||||||   ||||| |  ||||| ||||||||||||||||||||||||||||||    
T  7747941 gactccaagatttcaaaatcatcactaacacataattgttttagagatttgagttggaacaaaccccactcctctctc 7748018  T

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Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 8570998 - 8570909
Alignment:
Q  142 cagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaattcaatattccaagttggctcatgttggaagg 231  Q
    |||||| || ||||||||||||||||| ||||||||  ||||||| | ||||||||||||   |||| |||||| ||||| |||||||||    
T  8570998 cagagagttaagttggaacaaaccccaatcctctcttgaaccaattaattttgggcaattttgtattacaagtttgctcaagttggaagg 8570909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 5266062 - 5266118
Alignment:
Q  142 cagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggca 198  Q
    ||||||||| ||||||||||||||||||||| ||||| || |||| |||||||||||    
T  5266062 cagagaatttagttggaacaaaccccactcccctctcgaagcaattagttttgggca 5266118  T

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Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 6243266 - 6243330
Alignment:
Q  111 tttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctct 175  Q
    ||||||| |||||||||| | | ||||| | |||||| |||||||||||||||||||||||||||    
T  6243266 tttcaaaatcatcactaagactgaattgtttcagagatttgagttggaacaaaccccactcctct 6243330  T

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Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 6263631 - 6263695
Alignment:
Q  111 tttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctct 175  Q
    ||||||| |||||||||| | | ||||| | |||||| |||||||||||||||||||||||||||    
T  6263631 tttcaaaatcatcactaagactgaattgtttcagagatttgagttggaacaaaccccactcctct 6263695  T

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Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 5261877 - 5261956
Alignment:
Q  101 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaa 180  Q
    |||||||| || ||||| || ||||||||  | ||||  | |||||||||||||| ||||||||||||||||||||||||    
T  5261877 gactccacattctcaaagtcgtcactaactttgaattctttcagagaattgagttcgaacaaaccccactcctctctcaa 5261956  T

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Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 6235996 - 6236063
Alignment:
Q  111 tttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctc 178  Q
    ||||||| |||||||||||| | ||||| |  | ||| ||||||||||||||||||||||||||||||    
T  6235996 tttcaaaatcatcactaacactcaattgttttaaagatttgagttggaacaaaccccactcctctctc 6236063  T

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Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 6524057 - 6523993
Alignment:
Q  7 atgtgggacccataacttggtcttgctagcac--tgtggcgatgcaaattaactttcattgctgcc 70  Q
    ||||||||||||||||||||||||||||||||  ||||||| ||| ||||||| |||||| |||||    
T  6524057 atgtgggacccataacttggtcttgctagcactatgtggcggtgc-aattaaccttcattcctgcc 6523993  T

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Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 177
Target Start/End: Original strand, 6915082 - 6915116
Alignment:
Q  143 agagaattgagttggaacaaaccccactcctctct 177  Q
    |||||||||||||||||||||||||||||||||||    
T  6915082 agagaattgagttggaacaaaccccactcctctct 6915116  T

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Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 6842006 - 6841958
Alignment:
Q  7 atgtgggacccataacttggtcttgctagcac--tgtggcgatgcaaat 53  Q
    ||||||||||||||||||||||||||||||||  ||||||| |||||||    
T  6842006 atgtgggacccataacttggtcttgctagcactatgtggcggtgcaaat 6841958  T

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Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 6140235 - 6140299
Alignment:
Q  111 tttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctct 175  Q
    ||||||| |||||||||| | | ||||| | |||||| ||||||| |||||||||||||||||||    
T  6140235 tttcaaaatcatcactaagactgaattgtttcagagatttgagtttgaacaaaccccactcctct 6140299  T

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Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 6166846 - 6166910
Alignment:
Q  111 tttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctct 175  Q
    ||||||| |||||||||| | | ||||| | |||||| ||||||| |||||||||||||||||||    
T  6166846 tttcaaaatcatcactaagacttaattgtttcagagatttgagtttgaacaaaccccactcctct 6166910  T

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Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 6257151 - 6257215
Alignment:
Q  111 tttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctct 175  Q
    ||||||| || ||||||| | | ||||| | |||||| |||||||||||||||||||||||||||    
T  6257151 tttcaaaatcgtcactaagagtgaattgtttcagagatttgagttggaacaaaccccactcctct 6257215  T

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Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 13275484 - 13275420
Alignment:
Q  111 tttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctct 175  Q
    ||||||| |||||||||| | | ||||| | |||||| ||||||| |||||||||||||||||||    
T  13275484 tttcaaaatcatcactaagactgaattgtttcagagatttgagtttgaacaaaccccactcctct 13275420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 5248158 - 5248213
Alignment:
Q  143 agagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggca 198  Q
    |||||||| |||||||| |||||||||||| ||||| || |||| |||||||||||    
T  5248158 agagaattaagttggaataaaccccactcccctctcgaagcaattagttttgggca 5248213  T

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Target: scaffold0425 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 9853 - 9753
Alignment:
Q  101 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 200  Q
    |||||||||||||||||||||||  ||||||  ||    | ||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9853 gactccacgttttcaaactcatccgtaacaaagaaagatttcaaggaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaat 9754  T
Q  201 t 201  Q
    |    
T  9753 t 9753  T

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Target: scaffold0425; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 10211 - 10113
Alignment:
Q  7 atgtgggacccataacttggtcttgctagcac--tgtggcgatgcaaattaactttcattgctgccaaatgtggtcaatctccacattcgggatgtgact 104  Q
    ||||||||||||||||||||||||||||||||  ||||||| ||| ||||||| |||||| ||||  ||||| ||||||   ||||||||||||||||||    
T  10211 atgtgggacccataacttggtcttgctagcactatgtggcggtgc-aattaaccttcattcctgcttaatgttgtcaatgcacacattcgggatgtgact 10113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 13606 - 13548
Alignment:
Q  119 tcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctct 177  Q
    |||||||||||| | ||||| | ||||||||||||||||||||||||||||||||||||    
T  13606 tcatcactaacactgaattgtttcagagaattgagttggaacaaaccccactcctctct 13548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2053 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold2053
Description:

Target: scaffold2053; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 301 - 245
Alignment:
Q  146 gaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaattc 202  Q
    |||||||||||||||||||||||||||| |||  || ||||||||||||||||||||    
T  301 gaattgagttggaacaaaccccactcctttcttgaagcaatcagttttgggcaattc 245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0958 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 1841 - 1752
Alignment:
Q  142 cagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaattcaatattccaagttggctcatgttggaagg 231  Q
    |||||| |||||||||||||||||||  |||| |||| ||||||| ||||||||||||||   ||||  ||||| ||||| |||||||||    
T  1841 cagagagttgagttggaacaaacccctttcctgtctccaaccaattagttttgggcaattgtctattataagtttgctcaagttggaagg 1752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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