View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_446 (Length: 234)
Name: NF9264A_low_446
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_446 |
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Alignment Details
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 200
Target Start/End: Complemental strand, 31133768 - 31133640
Alignment:
| Q |
65 |
agttgactatttcagacgtatatatgccgcctcctgaaaaagaaataaaaaagaaagaatggannnnnnnnnnnnngtttgtttgttgtctatttctttc |
164 |
Q |
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| T |
31133768 |
agttgactatttcagacgtatatatgcc---tcctgaaaaagaaataaaaaataaagaaaaaaaaaattat-----gtttgtttgttgtctatttgtttc |
31133677 |
T |
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| Q |
165 |
atagcgtag-gtgtgtttgatttcctgtttgcaatat |
200 |
Q |
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|||||| || ||||||||||||||||||||||||||| |
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| T |
31133676 |
atagcgcagtgtgtgtttgatttcctgtttgcaatat |
31133640 |
T |
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