View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9264A_low_452 (Length: 233)
Name: NF9264A_low_452
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_452 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 48673902 - 48673683
Alignment:
| Q |
1 |
aaattggattctgccaaatgattcatattaatggaagctctttaaccacttaaattcaatcatttagttgcaatgtataaatctaatccctcacannnnn |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48673902 |
aaattggattcttccaaatgattcatattaatggaagctctttaaccacttaaattcaatcatttagttgcaatgtataaatctaatccctcacattttt |
48673803 |
T |
|
| Q |
101 |
nn-gaaagaatttaatccctcacattattgatattctaaaaggatcctgaaattgcaacattttaatcaaacttgtccatgtgttgttatatggaggata |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48673802 |
tttgaaagaatttaatccctcacattattgatattctaaaaggatcctgaaattgcaacattttaatcaaacttgtccatgtgttgttatatggaggata |
48673703 |
T |
|
| Q |
200 |
aatttgaaagtaagttaata |
219 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
48673702 |
aatttgaaagtaagttaata |
48673683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 4156067 - 4156013
Alignment:
| Q |
123 |
attattgatattctaaaaggatc-ctgaaattgcaacattttaatcaaacttgtc |
176 |
Q |
| |
|
||||| |||||||||||| |||| |||||||||||| |||||||||||| ||||| |
|
|
| T |
4156067 |
attatggatattctaaaatgatctctgaaattgcaaaattttaatcaaatttgtc |
4156013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 40258868 - 40258808
Alignment:
| Q |
118 |
ctcacattattgatattctaaaaggatc-ctgaaattgcaacattttaatcaaacttgtcc |
177 |
Q |
| |
|
|||||||||| ||||||| |||| |||| |||||||| ||| |||||||||||| |||||| |
|
|
| T |
40258868 |
ctcacattatcgatattcaaaaatgatctctgaaattacaaaattttaatcaaatttgtcc |
40258808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 12241375 - 12241431
Alignment:
| Q |
115 |
tccctcacattattgatattctaaaaggatcct-gaaattgcaacattttaatcaaa |
170 |
Q |
| |
|
||||||||||||| |||||| ||||| ||| || |||||||||| |||||||||||| |
|
|
| T |
12241375 |
tccctcacattatcgatattttaaaatgattcttgaaattgcaaaattttaatcaaa |
12241431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University