View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_46 (Length: 417)
Name: NF9264A_low_46
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 12 - 411
Target Start/End: Complemental strand, 36603600 - 36603201
Alignment:
| Q |
12 |
tattctacgatgcatcagttatttggggcttaattggtccaagaagaatcttcggaaacttaggaacctacgagaatatcaattggttcttcctaggtgg |
111 |
Q |
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| T |
36603600 |
tattctacgatgcatcagttatttggggcttaattggtccaagaagaatcttcggaaacttaggaacctacgagaatatcaattggttcttcctaggtgg |
36603501 |
T |
|
| Q |
112 |
agccattgctcctttgttagtttggttagctacaagagcctttccacaacaagaatggattaaactcatcaacatgcctgtgttgataggtgctactgga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36603500 |
agccattgctcctttgttagtttggttagctacaagagcctttccacaacaagaatggattaaactcatcaacatgcctgtgttgataggtgctactgga |
36603401 |
T |
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| Q |
212 |
atgatgccaccagctacagcagtgaattacactagctggatcattgttggttttttgtctgggtttgttgtgtataggtataaaccagattggtggcagc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||| |
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| T |
36603400 |
atgatgccaccagctacagcagtgaattacactagctggatcattgttggttttttgtctggttttgttgtgtataggtataagccagaatggtggcagc |
36603301 |
T |
|
| Q |
312 |
gtcataattatgtgttgtctggtgcattggatgctggtcttgctttcatgggtgtggttttgtacctttgtttaggattagaggaaataagtattgattg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36603300 |
gtcataattatgtgttgtctggtgcattggatgctggtcttgctttcatgggtgtggttttgtacctttgtttaggattagaggaaataagtattgattg |
36603201 |
T |
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