View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9264A_low_461 (Length: 231)
Name: NF9264A_low_461
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_461 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 11905936 - 11905752
Alignment:
| Q |
21 |
agcttttctttattccttggtgaaagctagaacctgaaaacaaatacaaattttagttgattatcacataagatttaaacttgttatctgtgtatgcatg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11905936 |
agcttttctttattccttggtgaaagctagaacctgaaaacaaatacaaattttagttgattatcacataagatttaaacgtgttatctgtgtatgcatg |
11905837 |
T |
|
| Q |
121 |
gttgggcgtgccacataggttatgaatgtaatatggtaaacttacatgatttatcatcaatggtgctttggtgttccgagaataat |
206 |
Q |
| |
|
| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11905836 |
ggt-ggcgtgccacatatgttatgaatgtaatatggtaaacttacatgatttatcatcaatggtgctttggtgttccgagattaat |
11905752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 11892321 - 11892223
Alignment:
| Q |
28 |
ctttattccttggtgaaagctagaacctgaaaacaaatacaaattttagttgattatcacataagatttaaacttgttatctgtgtatgcatggttggg |
126 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||| | |||| |||||||| |||||| |||||||| ||| || ||||| || |||| |||| |
|
|
| T |
11892321 |
ctttattccttgatgaaaactagaacctgaaaacaaataagagtttttgttgattagtacataaaatttaaacatgtgatatgtgtgtgtatgggtggg |
11892223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 11892194 - 11892152
Alignment:
| Q |
153 |
atggtaaacttacatgatttatcatcaatggtgctttggtgtt |
195 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||||||||| |
|
|
| T |
11892194 |
atggtaaacttacataatttatcaccaatggtgatttggtgtt |
11892152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University