View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_471 (Length: 230)
Name: NF9264A_low_471
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_471 |
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| [»] chr2 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 38486850 - 38486627
Alignment:
| Q |
7 |
tgctccccatttccactggcaaccttggcttcaaacattgatatttgattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtga |
106 |
Q |
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| T |
38486850 |
tgctccccatttccactggcaaccttggcttcaaacattgatatttgattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtga |
38486751 |
T |
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| Q |
107 |
tattacctccacgaatagtacagttaaaaccggcaaaaatgtcctcgcttatgttgatcactctagaagctttactgataccacctctagttataaacca |
206 |
Q |
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| T |
38486750 |
tattacctccacgaatagtacagttaaaaccggcaaaaatgtcctcgcttatgttgatcactctagaagctttactgataccacctctagttataaacca |
38486651 |
T |
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| Q |
207 |
aaacctgtcaaacacatcaggatg |
230 |
Q |
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| T |
38486650 |
aaacctgtcaaacacatcaggatg |
38486627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 3686081 - 3685858
Alignment:
| Q |
7 |
tgctccccatttccactggcaaccttggcttcaaacattgatatttgattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtga |
106 |
Q |
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| T |
3686081 |
tgctcgccattgccacttgcgaccttggcctcaaacatggatatctgattcaagccaacatctcttcctttacctacctgtatatattcatgatgtgtca |
3685982 |
T |
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| Q |
107 |
tattacctccacgaatagtacagttaaaaccggcaaaaatgtcctcgcttatgttgatcactctagaagctttactgataccacctctagttataaacca |
206 |
Q |
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| T |
3685981 |
cattgccacctcgcaatgtacaattgaaaccagcaaaaatatcttcactaatattgatcactctagatgccttgctgactccacccctacacaagaacca |
3685882 |
T |
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| Q |
207 |
aaacctgtcaaacacatcaggatg |
230 |
Q |
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| T |
3685881 |
aaatctgtcaaacacatccggatg |
3685858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 26002243 - 26002355
Alignment:
| Q |
7 |
tgctccccatttccactggcaaccttggcttcaaacattgatatttgattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtga |
106 |
Q |
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| T |
26002243 |
tgctcaccattcccattagcaatctttgcttcaaacattgatatctggttaagaccgacgtcccttcctttaccaacttgtatgtactcatgatgagtga |
26002342 |
T |
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| Q |
107 |
tattacctccacg |
119 |
Q |
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| T |
26002343 |
catttccttcacg |
26002355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 30121246 - 30121026
Alignment:
| Q |
10 |
tccccatttccactggcaaccttggcttcaaacattgatatttgattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtgatat |
109 |
Q |
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| T |
30121246 |
tccccgttgccactagcaaccttggcttcaaacattgatacttgattcagaccaacatcccttccctttccaacctgaatgtattcatggtgagtgacat |
30121147 |
T |
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| Q |
110 |
tacctccacgaatagtacagttaaaaccggcaaaaatgtcctcgcttatgttgatcactctagaagctttactgataccacctctagttataaaccaaaa |
209 |
Q |
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| T |
30121146 |
tacctccacgaagagtacaattgaacccagcaaatatgtcctcgcttatgttgatcactctggaagctttgctgataccacctcgagttaagaaccaaaa |
30121047 |
T |
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| Q |
210 |
cctgtcaaacacatcaggatg |
230 |
Q |
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| T |
30121046 |
cctgtcaaacacatctggatg |
30121026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 43955842 - 43955900
Alignment:
| Q |
52 |
tgattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtgatatt |
110 |
Q |
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| T |
43955842 |
tgattcatcccaacatctctaccctttccaacttggatgtattcatgatgagtaatatt |
43955900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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