View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_472 (Length: 230)
Name: NF9264A_low_472
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_472 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 21041039 - 21041253
Alignment:
| Q |
7 |
tgggcataatttacatgactgatttaatgggttcaataatcaataataccatatggttcatgctctgatcagtgttggatttggtaactaacactaagcc |
106 |
Q |
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| T |
21041039 |
tgggcataatttacatgactgatttaatgggttcaa-------taataccatatggttcatgctctgatcagtgttggatttggtaactaacactaagcc |
21041131 |
T |
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| Q |
107 |
cgattgaaccagaagggacgatctgttgaatgatttgacaatctaatatcttaagatcggtgctaacggaaaatgtattagttggatcactgtctttaga |
206 |
Q |
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| T |
21041132 |
cgattgaaccagaagggacgatatgttgaatgatttgacaatctaatatcttaagatcggtgctaaccgaaaatgtattagttggatcactgtctttaga |
21041231 |
T |
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| Q |
207 |
gcaaactgaacaccttagaaac |
228 |
Q |
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|||||||||||||||||||||| |
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| T |
21041232 |
gcaaactgaacaccttagaaac |
21041253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 21064134 - 21064348
Alignment:
| Q |
7 |
tgggcataatttacatgactgatttaatgggttcaataatcaataataccatatggttcatgctctgatcagtgttggatttggtaactaacactaagcc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21064134 |
tgggcataatttacatgactgatttaatgggttcaa-------taataccatatggttcatgctctgatcagtgttggatttggtaactaacactaagcc |
21064226 |
T |
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| Q |
107 |
cgattgaaccagaagggacgatctgttgaatgatttgacaatctaatatcttaagatcggtgctaacggaaaatgtattagttggatcactgtctttaga |
206 |
Q |
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| T |
21064227 |
cgattgaaccagaagggacaatctgttgaatgatttgacaatctaatatcttaagatcggtgctaaccgaaaatgtattagttggatcactgtctttaga |
21064326 |
T |
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| Q |
207 |
gcaaactgaacaccttagaaac |
228 |
Q |
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|||||||||||||||||||||| |
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| T |
21064327 |
gcaaactgaacaccttagaaac |
21064348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 21086096 - 21086137
Alignment:
| Q |
189 |
tggatcactgtctttagagcaaactgaacaccttagaaacta |
230 |
Q |
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| T |
21086096 |
tggatcactatctttagagcaaactgaacatcttagaaacta |
21086137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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