View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_48 (Length: 415)
Name: NF9264A_low_48
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 138 - 411
Target Start/End: Original strand, 6235414 - 6235686
Alignment:
| Q |
138 |
tgattatgctttaaatataaatgtactcaatcataaaacatacacatttccatataaatttctttttgatatcaacagttagnnnnnnnttatgttcact |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
6235414 |
tgattatgctttaaatataaatgtactcaatcataaaacatactcattttcatataaatttctttttgatatcaacggtta-aaaaaaattatgttcact |
6235512 |
T |
|
| Q |
238 |
ggctaggatttacaccaatttgagttgcatatcaaattattaatagttaggtagcagaatagcacatgatgatccattaaatctcaatacagatgcctca |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6235513 |
ggctaggatttacaccaatttgagttgcatatcaaattattaatagttaggtagcagaatagcacatgatgatccattaaatctcaatacagatgcctca |
6235612 |
T |
|
| Q |
338 |
ctcctagtaccattgtgcttataaggagacaatataatttattcataccattgtactttaacaaaggaattgtg |
411 |
Q |
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| T |
6235613 |
ctcctagtaccattgtgcttataaggagacaatataatttattcataccattgtactttaacaaaggaattgtg |
6235686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 6235290 - 6235330
Alignment:
| Q |
9 |
atatgaaggaacatgatcaaatacatcaataatcagatata |
49 |
Q |
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| T |
6235290 |
atatgaaggaacatgatcaaatacatcaataattagatata |
6235330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 2973296 - 2973215
Alignment:
| Q |
138 |
tgattatgctttaaatataaatgtactcaatcataaaacatacacatttccatataaatttctttttgatatcaacagttag |
219 |
Q |
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| T |
2973296 |
tgattatgctttaaatataaatgtcctcaatcataaaacatactcattttcatataaatttctttttgatatcaacagttag |
2973215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 2975539 - 2975469
Alignment:
| Q |
138 |
tgattatgctttaaatataaatgtactcaatcataaaacatacacatttccatataaatttctttttgatatcaaca |
214 |
Q |
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| T |
2975539 |
tgattatgctttaaatataaatgtcctcaatcataaaacatactcatttcc------atttctttttgatatcaaca |
2975469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 366
Target Start/End: Complemental strand, 2972908 - 2972852
Alignment:
| Q |
309 |
atccattaaatctcaatacagatgcctcactcctagtaccattgtgcttataaggaga |
366 |
Q |
| |
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| T |
2972908 |
atccattaaatctcaatacagatgcctcactccta-tatcattatgcttagaaggaga |
2972852 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 2975679 - 2975638
Alignment:
| Q |
9 |
atatgaaggaacatgatcaaatacatcaataatcagatatat |
50 |
Q |
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| T |
2975679 |
atatgaaggaacatgatcaaatacatcaatattcagatatat |
2975638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 39
Target Start/End: Complemental strand, 2973434 - 2973404
Alignment:
| Q |
9 |
atatgaaggaacatgatcaaatacatcaata |
39 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2973434 |
atatgaaggaacatgatcaaatacatcaata |
2973404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 311
Target Start/End: Original strand, 6026670 - 6026831
Alignment:
| Q |
150 |
aaatataaatgtactcaatcataaaacatacacatttccatataaatttctttttgatatcaacagttagnnnnnnnttatgttcactggctaggattta |
249 |
Q |
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||||||| ||||||||||| ||| | ||| ||||||||||||||||||||||| |||||||| |||| |||| ||||| | ||||||| | |
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| T |
6026670 |
aaatatatatgtactcaat---aaagcgtactcatttccatataaatttctttttattatcaacaattagatatttgttattttcacatg-taggattca |
6026765 |
T |
|
| Q |
250 |
caccaatttgagttgcatatcaaattattaa----tagttaggtagcagaatagcacatgatgatc |
311 |
Q |
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||||| ||||| |||| ||||| |||||||| ||||||||||| ||||||||||||| ||||| |
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| T |
6026766 |
caccagtttgaattgcctatcagattattaatagttagttaggtagtagaatagcacatggtgatc |
6026831 |
T |
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