View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_480 (Length: 230)
Name: NF9264A_low_480
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_480 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 34851788 - 34852012
Alignment:
| Q |
1 |
aggaaccataatttaatttattttggctaagaaaagttttcataattaaaaactagatattaaaatatggccactatcattagtattatgcctttgttac |
100 |
Q |
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| T |
34851788 |
aggaaccataatttaatttattttggctaagaaaagttttcataattaaaaactagatattaaaaaatggccactatcattagtattatgtctttgttac |
34851887 |
T |
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| Q |
101 |
tcattttcattacacaatttcgatttttccaggttccctttattactaaatcagtgaggcatggtattaaaatttagcatcctgcaggtacatattcctt |
200 |
Q |
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| T |
34851888 |
tcattttcattacacaatttcgatttttccaggttccctttattactaaatcagtgaggcatggtattaaaatttagcatcctgcaggtacagattcctt |
34851987 |
T |
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| Q |
201 |
ctccttcatcttccatgaccaaact |
225 |
Q |
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| T |
34851988 |
ctccttcatcttccatgaccaaact |
34852012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 3512770 - 3512828
Alignment:
| Q |
129 |
ccaggttccctttattactaaatcagtgaggcatggtattaaaatttagcatcctgcag |
187 |
Q |
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| T |
3512770 |
ccaggttccctttattactaaatcactgaaacatggtgttaagagttagcattctgcag |
3512828 |
T |
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