View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_505 (Length: 230)
Name: NF9264A_low_505
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_505 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 39296679 - 39296908
Alignment:
| Q |
1 |
gcatttggaatcatatcagatggaaaaaaggatcacatgatgctagctggtgcagttggtgattttacaaaatcattagtttcttcacctcctaaacatc |
100 |
Q |
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| T |
39296679 |
gcatttggaatcatatcagatggaaaaaaggatcacatgatgctagctggtgcagttggtgattttacaaaatcattagtttcttcacctcctaaacatc |
39296778 |
T |
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| Q |
101 |
tttggattcgttcagttcattttgctggattaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaacaggttctggaatttgtgtgttcct |
200 |
Q |
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| T |
39296779 |
tttggattcgttcagttcattttgctggattaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaacaggttctggaatttgtgtgttcct |
39296878 |
T |
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| Q |
201 |
atcatatctcttgcagaaaagtaaggctga |
230 |
Q |
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| T |
39296879 |
atcatatctcttgcagaaaagtaaggctga |
39296908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 39289799 - 39290028
Alignment:
| Q |
1 |
gcatttggaatcatatcagatggaaaaaaggatcacatgatgctagctggtgcagttggtgattttacaaaatcattagtttcttcacctcctaaacatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289799 |
gcatttggaatcatatcagatggaaaaaaggatcacatgatgctagctggtgcagttggtgattttacaaaatcattagtttcttcacctcctaaacatc |
39289898 |
T |
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| Q |
101 |
tttggattcgttcagttcattttgctggattaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaacaggttctggaatttgtgtgttcct |
200 |
Q |
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| T |
39289899 |
tttggattcgttcagttcattttgctggattaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaacaggttctgggatttgtgtgttctt |
39289998 |
T |
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| Q |
201 |
atcatatctcttgcagaaaagtaaggctga |
230 |
Q |
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| T |
39289999 |
atcatttctgttgcagaaaaataaggctga |
39290028 |
T |
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