View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_513 (Length: 229)
Name: NF9264A_low_513
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_513 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 28828846 - 28828654
Alignment:
| Q |
1 |
aaaaactcattgtcctcgtaattgttggtaagttgttcatcggactgttgttggatgcatattattttcattgttgcaatattcattgttggagattaac |
100 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||| |
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| T |
28828846 |
aaaaactcattgtcctcgtaattgttgggaagttgttcatcggactgttgttggacgcatatttttttcatttttg---------------gagattaac |
28828762 |
T |
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| Q |
101 |
ataatcaaaatcacatacttctcaaaaagatatctctcaaaaataatttttacgagaagtaattcaaaatatcttctcattttaagcattttttaaaatt |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28828761 |
ataatcaaaatcacatacttttcaaaaagatatctctcaaaattaatttttacgagaagtcattcaaaatatcttctcattttaagcattttttaaaatt |
28828662 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 39888727 - 39888615
Alignment:
| Q |
96 |
ttaacataatcaaaatcacatacttct--caaaaagatatctctcaaaaataatttttacgagaagtaattcaaaatatcttctcattttaagcattttt |
193 |
Q |
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|||||||||| ||||||||||| || | ||||||||||||||||||| |||||||||| |||||| |||||||||||||| |||||| |||| ||||| |
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| T |
39888727 |
ttaacataataaaaatcacatatttttttcaaaaagatatctctcaaa--taatttttaccagaagttattcaaaatatcttttcatttaaagcgttttt |
39888630 |
T |
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| Q |
194 |
taaaattttactatc |
208 |
Q |
| |
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|||| |||| |||| |
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| T |
39888629 |
aaaaactttattatc |
39888615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 30389593 - 30389523
Alignment:
| Q |
124 |
aaaaagatatctctcaaaaataatttttacgagaagtaattcaaaatatcttctcattttaagcatttttt |
194 |
Q |
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| T |
30389593 |
aaaaagatatctcttgaaaatggtttttatgagaagctattgaaaatagcttctcattttaagcatttttt |
30389523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 208
Target Start/End: Complemental strand, 28769905 - 28769775
Alignment:
| Q |
79 |
atattcattgttggagatt-aacataatcaaaatcacatacttctcaaaaagatatctctcaaaaataatttttacgagaagtaattcaaaatatcttct |
177 |
Q |
| |
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|||||||||||| |||||| || || || ||| ||||||| | |||||||||||| | ||||||| ||||||| ||||| ||| |||||| ||| | |
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| T |
28769905 |
atattcattgtttgagatttaaaattataaaactcacatatatttcaaaaagatatatgtcaaaaaagatttttaagagaaactatttaaaatagcttat |
28769806 |
T |
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| Q |
178 |
cattttaagcattttttaaaattttactatc |
208 |
Q |
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||| |||||||||||||||||||||| |||| |
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| T |
28769805 |
catgttaagcattttttaaaattttattatc |
28769775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 19227391 - 19227466
Alignment:
| Q |
119 |
ttctcaaaaagatatctctcaaaaataatttttacgagaagtaattcaaaatatcttctcattttaagcatttttt |
194 |
Q |
| |
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||||| ||||||||| || |||||| |||||||||| ||| ||||||||| |||||||||||||||||||||| |
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| T |
19227391 |
ttctcgaaaagatataacttaaaaatgatttttacgaaaagcttttcaaaatagcttctcattttaagcatttttt |
19227466 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 30353171 - 30353130
Alignment:
| Q |
162 |
attcaaaatatcttctcattttaagcattttttaaaatttta |
203 |
Q |
| |
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|||||||||| |||||||||||||||||||||| |||||||| |
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| T |
30353171 |
attcaaaatagcttctcattttaagcattttttgaaatttta |
30353130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 203
Target Start/End: Original strand, 23736603 - 23736633
Alignment:
| Q |
173 |
cttctcattttaagcattttttaaaatttta |
203 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
23736603 |
cttctcattttaagcattttttaaaatttta |
23736633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 39499393 - 39499466
Alignment:
| Q |
135 |
tctcaaaaataatttttacgagaagtaattcaaaatatcttctcattttaagcattttttaaaattttactatc |
208 |
Q |
| |
|
|||||||||||||||||| ||||| ||| ||| ||| |||||||||||| | |||||| |||||||| |||| |
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| T |
39499393 |
tctcaaaaataatttttatgagaaactattgaaactattttctcattttaatctttttttgaaattttagtatc |
39499466 |
T |
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