View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_52 (Length: 412)
Name: NF9264A_low_52
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 3 - 406
Target Start/End: Complemental strand, 4236321 - 4235918
Alignment:
| Q |
3 |
gatgaaacagtggttgaaggtgaacaatttcgtaacttcacacacgaagagaggttggcgaaagttgagaaaatatctgtgatggcaaggtcttctcctt |
102 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | |
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| T |
4236321 |
gatgaaacagtggttgaaggcgaacaatttcgtaacttcacacacgaagagaggttggcgaaagttgagaaaatctctgtgatggcaagatcttctccat |
4236222 |
T |
|
| Q |
103 |
ttgataaacttctaatggtacaatgcttaaaacaatcaggtcatgtagttgatgtaactggagatggaacaaacgatgcaccggcattgaaagaagctga |
202 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
4236221 |
ttgataaacttctaatggtacaatgcttaaaacaaaaaggtcatgtagttgctgtaaccggagacggaacaaacgatgcaccagcattgaaagaagctga |
4236122 |
T |
|
| Q |
203 |
tattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctatagtaacagttata |
302 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4236121 |
tattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctattgtaacagttata |
4236022 |
T |
|
| Q |
303 |
aattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggttt |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236021 |
aattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggttt |
4235922 |
T |
|
| Q |
403 |
cagc |
406 |
Q |
| |
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|||| |
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|
| T |
4235921 |
cagc |
4235918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 30441333 - 30441396
Alignment:
| Q |
186 |
gcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagaga |
249 |
Q |
| |
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||||||| |||||||| ||||||| |||| ||||||||||||||||| ||||| |||||||||| |
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|
| T |
30441333 |
gcattgatagaagctggtattggaatttccatgggaattcaaggtaccgaagttgcaaaagaga |
30441396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 2 - 406
Target Start/End: Complemental strand, 6185446 - 6185042
Alignment:
| Q |
2 |
agatgaaacagtggttgaaggtgaacaatttcgtaacttcacacacgaagagaggttggcgaaagttgagaaaatatctgtgatggcaaggtcttctcct |
101 |
Q |
| |
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||||||||| ||||||||||| ||||||||||| ||||| || ||||||||||| || | || ||||| ||||||| |||||||||||| || ||||| |
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| T |
6185446 |
agatgaaacggtggttgaaggcgaacaatttcgcaactttacgcacgaagagagattagaaaaggttgaaaaaatatgtgtgatggcaagatcatctcca |
6185347 |
T |
|
| Q |
102 |
tttgataaacttctaatggtacaatgcttaaaacaatcaggtcatgtagttgatgtaactggagatggaacaaacgatgcaccggcattgaaagaagctg |
201 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| | |
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|
| T |
6185346 |
tttgacaaacttctaatggttcaatgcttaaaacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcaccggcattgaaagaagccg |
6185247 |
T |
|
| Q |
202 |
atattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctatagtaacagttat |
301 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
6185246 |
atatcggactttcaatgggaattcaaggtactgaagttgcaaaagagagttcagatattgttatattagatgacaattttgcatctatcgtaacagtgtt |
6185147 |
T |
|
| Q |
302 |
aaattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggtt |
401 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||| || ||||||||| |
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|
| T |
6185146 |
aaactggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaactaacagtgaatgtggcagcccttgttatcaatttcgttgcggcggtt |
6185047 |
T |
|
| Q |
402 |
tcagc |
406 |
Q |
| |
|
||||| |
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|
| T |
6185046 |
tcagc |
6185042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 168 - 387
Target Start/End: Complemental strand, 19593039 - 19592829
Alignment:
| Q |
168 |
ggaacaaacgatgcaccggcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatat |
267 |
Q |
| |
|
|||| ||| |||||| | ||| ||||||||||| |||||| |||||| |||| |||||||||||| ||||| ||||||||||| |||||||||||||||| |
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| T |
19593039 |
ggaagaaatgatgcatcagcactgaaagaagctaatattgaactttccatggaaattcaaggtaccgaagttgcaaaagagagctcagatattgttatat |
19592940 |
T |
|
| Q |
268 |
tagatgacaattttgcatctatagtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgt |
367 |
Q |
| |
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||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
19592939 |
tagatgacaattttgcatctatagtaacaattttaaattggggaagatgtgtttacaacaacattcaaaaattcattcaatt---------agtgaatgt |
19592849 |
T |
|
| Q |
368 |
ggcagcacttgttataaatt |
387 |
Q |
| |
|
||||||||||||||| |||| |
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|
| T |
19592848 |
ggcagcacttgttatcaatt |
19592829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 140 - 385
Target Start/End: Complemental strand, 38357128 - 38356883
Alignment:
| Q |
140 |
aggtcatgtagttgatgtaactggagatggaacaaacgatgcaccggcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagta |
239 |
Q |
| |
|
|||||||||||||| || || || || || |||||||||||||| || || |||||||||||||| |||||||| |||||||| ||||| || ||||| |
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| T |
38357128 |
aggtcatgtagttgcggtcacaggcgacggcacaaacgatgcacctgccttaaaagaagctgatataggactttctatgggaatccaaggaaccgaagtc |
38357029 |
T |
|
| Q |
240 |
gcaaaagagagttcagatattgttatattagatgacaattttgcatctatagtaacagttataaattggggaagatgtgtttacaacaacattcaaaaat |
339 |
Q |
| |
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|| ||||| ||||| ||||| || || ||||| ||||| || ||| | | ||| ||| ||| |||||||||||||||||||||||||| || |||| |
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| T |
38357028 |
gccaaagaaagttccgatatcgtcatcttagacgacaacttcaattctgttgcaactgttttaaggtggggaagatgtgtttacaacaacatccagaaat |
38356929 |
T |
|
| Q |
340 |
tcattcaatttcaattaacagtgaatgtggcagcacttgttataaa |
385 |
Q |
| |
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| ||||| |||||| ||||||||||||| ||||||||||| ||||| |
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|
| T |
38356928 |
ttattcagtttcaactaacagtgaatgttgcagcacttgtgataaa |
38356883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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