View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_521 (Length: 229)
Name: NF9264A_low_521
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_521 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 7589799 - 7589606
Alignment:
| Q |
19 |
catcaatccattcctaacatttcatcttgtctaattttgtatttgcaactactccttcgttcaacattcgatcaggctaattctaggagtaaaagaaatc |
118 |
Q |
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| T |
7589799 |
catcaatccattcctaacatttcatcttgtctaattttgtatttgcaactactccttcgttcaccattcgatcaggctaattatgggagtaaaagaaatc |
7589700 |
T |
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| Q |
119 |
gtgtctgcaccgtagctgcaagtttgaggcgactt---agagtcgtgatttagaagnnnnnnncgcatgaggtaagggcacttccccattcaac |
209 |
Q |
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| T |
7589699 |
gtgtctgcaccgtagctgcaagtttgaggcgacttagaagagtcgtgatttagaagaaaaaaacgcatgaggtaagggcacttccccattcaac |
7589606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 39184075 - 39184196
Alignment:
| Q |
19 |
catcaatccattcctaacatttcatcttgtctaattttgtatttgcaactactccttcgttcaacattcgatcaggctaattctaggagtaaaagaaatc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||| |
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| T |
39184075 |
catcaatccattcctaacatttcatcttgtctaattttgtaattgcaactactccttcgttcaccattcgatcgggctaattctgagagtaaaagaaatc |
39184174 |
T |
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| Q |
119 |
gtgtctgcaccgtagctgcaag |
140 |
Q |
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| T |
39184175 |
gtgtctgcaccgtagctgcaag |
39184196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 21491864 - 21491762
Alignment:
| Q |
68 |
tactccttcgttcaacattcgatcaggctaattctaggagtaaaagaaatcgtgtctgcaccgtagctgcaagtttgaggcgacttagagtcgtgattta |
167 |
Q |
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| T |
21491864 |
tactccttcgttcaccattcgttcgggctaattctgggagtaaaagaaattgtgtctgcatcgtagctgcaagtttgaggcggcttagagtcgtgattta |
21491765 |
T |
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| Q |
168 |
gaa |
170 |
Q |
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| T |
21491764 |
gaa |
21491762 |
T |
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