View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_527 (Length: 229)
Name: NF9264A_low_527
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_527 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 2442889 - 2442696
Alignment:
| Q |
16 |
aatatttgtatatgagtttgttaaccttgtttttgtttcaagttcatctcactgacgctgtttaccagaaattgatcgagggctcctctatattaccatt |
115 |
Q |
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| T |
2442889 |
aatatttgtatatgagtttgttaaccttgtttttgtttcaagttcatcacactaacactgtttaccagaaattgatcgagggcttctttatattaccatt |
2442790 |
T |
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| Q |
116 |
ttacaatgcaattctagaaattttgtatcattctatcgcatgcagagcaagatagtctgaaaatggttgcaaaaagagaagctagagttcggtc |
209 |
Q |
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| T |
2442789 |
ttacaatcaatttatacaaattttgtatcattctatcgcacgcagagcaagatagtctgaaaatggttgcaaaaagagaagctagagttcggtc |
2442696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 172
Target Start/End: Original strand, 50984196 - 50984328
Alignment:
| Q |
40 |
ccttgtttttgtttcaagttcatctcactgacgctgt--ttaccagaaattgatcgagggctcctctatattaccattttacaatgcaattctagaaatt |
137 |
Q |
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| T |
50984196 |
ccttgattttgtttcaacttcatctcactgaaactgtgttttctagaaattgattgagggcttctctatattaccatttt-caat-caattctacaaatt |
50984293 |
T |
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| Q |
138 |
ttgtatcattctatcgcatgcagagcaagatagtc |
172 |
Q |
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| T |
50984294 |
ttgttttaatctgtcacatgcagagcaagatagtc |
50984328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 34019916 - 34019952
Alignment:
| Q |
160 |
gagcaagatagtctgaaaatggttgcaaaaagagaag |
196 |
Q |
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| T |
34019916 |
gagcaagatagtctgaaaatggttgcaaaaagagaag |
34019952 |
T |
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