View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_533 (Length: 228)
Name: NF9264A_low_533
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_533 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 49165900 - 49166116
Alignment:
| Q |
1 |
gaaattcattctcgagcaagtacttgggtcccaaaaagaagactgcaatgttacagtttgaggaaaaattgtggcctgtacaattgatgtattatccatc |
100 |
Q |
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| T |
49165900 |
gaaattcattctcgagcaagtacttgggtcccaaaaagaagactgcaatgttacagtttgaggaaaaattgtggcctgtacaattgatgtattatccatc |
49165999 |
T |
|
| Q |
101 |
cgaaccagcaacaaagttgggtgaaggttggagtctgtttgtagaagaaaataaattgcaggctggagatgtatgtgtttttgtgcttgccaacaaggaa |
200 |
Q |
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| T |
49166000 |
cgaaccagcaacaaagttgggtgaaggttggagtctgtttgtagaagaaaataaattgcaggctggagatgtatgtgtttttgtgcttgccaacaaggaa |
49166099 |
T |
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| Q |
201 |
gatgttgtgcttgatgt |
217 |
Q |
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||||||||||||||||| |
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| T |
49166100 |
gatgttgtgcttgatgt |
49166116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 95 - 216
Target Start/End: Original strand, 43752422 - 43752543
Alignment:
| Q |
95 |
tccatccgaaccagcaacaaagttgggtgaaggttggagtctgtttgtagaagaaaataaattgcaggctggagatgtatgtgtttttgtgcttgccaac |
194 |
Q |
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| T |
43752422 |
tccatccgaaccgtcaaccaagttgagtacaggttggagtaagtttgtagaggaaaataaattggaggctggagatgtatgtgtttttgagctcgtcaat |
43752521 |
T |
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| Q |
195 |
aaggaagatgttgtgcttgatg |
216 |
Q |
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| T |
43752522 |
aaggaagatcttgtgtttgatg |
43752543 |
T |
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