View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_535 (Length: 228)
Name: NF9264A_low_535
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_535 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 21997 - 21775
Alignment:
| Q |
1 |
taccttttgcttcacctttgaagatataacaaaattccctaattttgtgtttcattttacgagagctgatgttacccttaaacctcagaacttagttgtt |
100 |
Q |
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| T |
21997 |
taccttttgcttcacctttggagatataacaaagttccctaattttgtgtttcattttacgagagctgatgttacccttaaacctcagaacttagttgtt |
21898 |
T |
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| Q |
101 |
aaggttggcaacaactcgtattgcttgtttgttgtaccaaataaaggtatttccatctttggaaatagagcacaatttaattttttagttgggtacgatc |
200 |
Q |
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| T |
21897 |
gagcttggcaaccactcgtattgcttgtttgtcgtaccaaataaaggtatttccatctttggaaatagagcacaatttaattttttagttgggtacgatc |
21798 |
T |
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| Q |
201 |
tcaaaggaaaaacagtttccttt |
223 |
Q |
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| T |
21797 |
tcaaaggaaaaacagtttccttt |
21775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 13959 - 13736
Alignment:
| Q |
1 |
taccttttgcttcacctttgaagatataacaaaattccctaattttgtgtttcattttacgagagctgatgttacccttaaacctcagaacttagttgtt |
100 |
Q |
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|||||||||||||||||||| |||| || |||| ||||||||||| ||||||||||| ||| |||| ||||||||||||||||||||||| ||| ||| | |
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| T |
13959 |
taccttttgcttcacctttggagatctagcaaagttccctaatttcgtgtttcatttcacgggagccgatgttacccttaaacctcagaaattacttggt |
13860 |
T |
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| Q |
101 |
aaggttggcaacaactcgtattgcttgtttgttgtaccaaataaaggtatttccatctttggaaatagagcacaatttaattttttagttgggtacgatc |
200 |
Q |
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| T |
13859 |
gttcttggcaacaactcgtattgcttgttggccataccatccaatgatctttccatctttggaaatatagcacacgttgattttctagtagaatatgatc |
13760 |
T |
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| Q |
201 |
tcaaaggaaaaacagtttcctttg |
224 |
Q |
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| T |
13759 |
tcgaagggaaaaaagtttcctttg |
13736 |
T |
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