View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_536 (Length: 228)
Name: NF9264A_low_536
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_536 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 106 - 223
Target Start/End: Complemental strand, 42944065 - 42943948
Alignment:
| Q |
106 |
atatgttccaagtttaaaatggcgaccataccactgaattcttttgtgtaccaattttttgtgctcgccattccaatattcaaagattcttacaggaaat |
205 |
Q |
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| T |
42944065 |
atatgttccaagtttaaaatggcgaccatgccattgaattcttttgtgtaccaattttttgtgctcgccattccaatattcaaagattcttacaggaaat |
42943966 |
T |
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| Q |
206 |
ttgcaagttgaatctgat |
223 |
Q |
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| T |
42943965 |
ttgcaagttgaacctgat |
42943948 |
T |
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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 42944171 - 42944140
Alignment:
| Q |
1 |
agcttctgtctattttacaaatgaaatggcga |
32 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
42944171 |
agcttctgtctattttacaaatgaaatggcga |
42944140 |
T |
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