View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_540 (Length: 227)
Name: NF9264A_low_540
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_540 |
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| [»] scaffold0036 (3 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 22375 - 22151
Alignment:
| Q |
1 |
tggtgttggagcaggaccactatcactagtttcacaactaggtgactcaattggtcacaaattctcctattgtttggttccttcatttttaaactcaact |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | |
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| T |
22375 |
tggtcttggagcaggaccactatcactagtttcacaactaggtgactcaattggtcacaaattctcctattgtttggttcctccaagtttaaactcaatt |
22276 |
T |
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| Q |
101 |
agcaaaatgaaatttggagatcaagcaattataaaagataatggcgttgtgtctactcccctcataatcaaatcttaaaatccttcttattacttcctca |
200 |
Q |
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| T |
22275 |
agcaaaatgaaatttggagatgaagcaattataaaagataatggcgttgtgtctactcccctcataatcaaatcttcaaatccttcttattacttcctca |
22176 |
T |
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| Q |
201 |
atctcgaaggaatcaccatcggaca |
225 |
Q |
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|||||||||| |||||||||||||| |
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| T |
22175 |
atctcgaaggcatcaccatcggaca |
22151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 217
Target Start/End: Complemental strand, 14312 - 14121
Alignment:
| Q |
26 |
ctagtttcacaactaggtgactcaattggtcacaaattctcctattgtttggttccttcatttttaaactcaactagcaaaatgaaatttggagatcaag |
125 |
Q |
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| T |
14312 |
ctagtttcacaactaggcgattctattggtcgaaaattctcttattgtttggttcctttcggttcaaactcgactagcaaattgaaatttggagatcaag |
14213 |
T |
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| Q |
126 |
caattataaaagataatggcgttgtgtctactcccctcataatcaaatcttaaaatccttcttattacttcctcaatctcgaaggaatcacc |
217 |
Q |
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| T |
14212 |
caattataaaaggcaatggtgttgtgtctactccccttatgatcaagtcatctgatccttatcattactatctcaatctcgaaggtatcacc |
14121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 41310 - 41477
Alignment:
| Q |
8 |
ggagcaggaccactatcactagtttcacaactaggtgactcaattggtcacaaattctcctattgtttggttccttcatttttaaactcaactagcaaaa |
107 |
Q |
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| T |
41310 |
ggagcaggaccattgtcactagtttcgcaactaggtcattctatcggtcgaaaattctcgtattgtttggttccttttggttcaaactcgactagtaaat |
41409 |
T |
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| Q |
108 |
tgaaatttggagatcaagcaattataaaagataatggcgttgtgtctactcccctcataatcaaatct |
175 |
Q |
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| T |
41410 |
tgacgtttgggaatcaatcaactataacgggtaatgaagttgtgtctactcccctcataatcaaatct |
41477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 26464543 - 26464376
Alignment:
| Q |
8 |
ggagcaggaccactatcactagtttcacaactaggtgactcaattggtcacaaattctcctattgtttggttccttcatttttaaactcaactagcaaaa |
107 |
Q |
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|||||||||||| | ||||||||||||||||||||| | || || |||| |||||||| |||||||||||||||| || |||||||||||| ||| |
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| T |
26464543 |
ggagcaggaccattttcactagtttcacaactaggtcattccatcggtcgaaaattctcttattgtttggttcctttcggttcaaactcaactagtaaac |
26464444 |
T |
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| Q |
108 |
tgaaatttggagatcaagcaattataaaagataatggcgttgtgtctactcccctcataatcaaatct |
175 |
Q |
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| T |
26464443 |
tcaagtttgggaaccaatcaactataacgggtaacgaagttgtgtctactccactcataatcaaatct |
26464376 |
T |
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