View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_546 (Length: 226)
Name: NF9264A_low_546
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_546 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 2 - 226
Target Start/End: Original strand, 5172905 - 5173129
Alignment:
| Q |
2 |
aaattacatgcaaggatcattttcattgaccaccttggctaatcactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacacatt |
101 |
Q |
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||||||||||||||||||||||||| | | || ||||||||||||||||||||||| |||||| |||||||| |||| || || || |||||||||||| |
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| T |
5172905 |
aaattacatgcaaggatcattttcacttatcattttggctaatcactccaatcttcagcatctacatatttcatcgaaaaacagcactggagtacacatt |
5173004 |
T |
|
| Q |
102 |
gaaactgaaaaaacaaaatggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaagacaaaggaagtgtcattcctactt |
201 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5173005 |
gaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctactt |
5173104 |
T |
|
| Q |
202 |
ttctttcttatcaatataatttgat |
226 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
5173105 |
ttctttcttatcaatataatttgat |
5173129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 5159988 - 5160213
Alignment:
| Q |
1 |
gaaattacatgcaaggatcattttcattgaccaccttggctaatcactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacacat |
100 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||| | ||||||||||||| | || || | || |||||| |||| |
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| T |
5159988 |
gaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttgaggttctatatatttcatcaaaaaacaatattggagtagacat |
5160087 |
T |
|
| Q |
101 |
tgaaactgaaaaaacaaaatggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaagacaaaggaagtgtcattcctact |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5160088 |
tgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctact |
5160187 |
T |
|
| Q |
201 |
tttctttcttatcaatataatttgat |
226 |
Q |
| |
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||||||||||||||||| |||||||| |
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| T |
5160188 |
tttctttcttatcaatacaatttgat |
5160213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 4842620 - 4842396
Alignment:
| Q |
2 |
aaattacatgcaaggatcattttcattgaccaccttggctaatcactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacacatt |
101 |
Q |
| |
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||||||||||||||||||||||||| | | || ||||||||||||||||||||||| ||||||||||||||| | || || |||| |||||||||||| |
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| T |
4842620 |
aaattacatgcaaggatcattttcacttatcaatttggctaatcactccaatcttcagcatctatatatttcatctaaaaacagtattggagtacacatt |
4842521 |
T |
|
| Q |
102 |
gaaactgaaaaaacaaaatggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaagacaaaggaagtgtcattcctactt |
201 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
4842520 |
gaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaacctaaacatgaagaaaggaagtgtcattcctactt |
4842421 |
T |
|
| Q |
202 |
ttctttcttatcaatataatttgat |
226 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
4842420 |
ttctttcttatcaatataatttgat |
4842396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4857095 - 4856875
Alignment:
| Q |
1 |
gaaattacatgcaaggatcattttcattgaccaccttggctaatcactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacacat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||| | || ||| ||||| | ||| |
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| T |
4857095 |
gaaattacatgcaaggatcattttcattgaccactttggctaatcactcaaatcttcagcatctatatatttcaccggaaaacagt---ggagttctcat |
4856999 |
T |
|
| Q |
101 |
tgaaactgaaaaaacaaaatggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaagacaaaggaagtgtcattcctact |
200 |
Q |
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|||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
4856998 |
tgaaactgaaaagacaaagtggtttcccaaatttcaattgaagacactcattcttagaaattgcaacctaaacatggacgaaggaagtgtcattcctact |
4856899 |
T |
|
| Q |
201 |
tttctttcttatcaatataatttg |
224 |
Q |
| |
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|||||||| ||||||||||||||| |
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| T |
4856898 |
tttctttcatatcaatataatttg |
4856875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 5182236 - 5182458
Alignment:
| Q |
1 |
gaaattacatgcaaggatcattttcattgaccaccttggctaatcactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |||||||||||||||||| | || ||| ||||| | ||| |
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| T |
5182236 |
gaaattacatgcaaggatcattttcattgagcactttggctaatcactcaaatcttcagcatctatatatttcaccggaaaacagt---ggagttctcat |
5182332 |
T |
|
| Q |
101 |
tgaaactgaaaaaacaaaatggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaagacaaaggaagtgtcattcctact |
200 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| |||||||||||||| |
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| T |
5182333 |
tgaaactgaaaagacaaagtggtttcccaaatttcaattgaagacactcattcttagaaattgcaacctaaacaaggagaaaggaggtgtcattcctact |
5182432 |
T |
|
| Q |
201 |
tttctttcttatcaatataatttgat |
226 |
Q |
| |
|
|||||||| ||||||||||||||||| |
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| T |
5182433 |
tttctttcatatcaatataatttgat |
5182458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 5195630 - 5195853
Alignment:
| Q |
1 |
gaaattacatgcaaggatcattttcattgaccaccttggctaatcactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||| | ||||||||||||| | || || | || |||||| |||| |
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|
| T |
5195630 |
gaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttgaggttctatatatttcatcaaaaaacaatattggagtagacat |
5195729 |
T |
|
| Q |
101 |
tgaaactgaaaaaacaaaatggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaagacaaaggaagtgtcattcctact |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
5195730 |
tgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtcacttattgttagaaattgcaacctaaacaaggacgaaggaagtgtcattcctact |
5195829 |
T |
|
| Q |
201 |
tttctttcttatcaatataatttg |
224 |
Q |
| |
|
|||||||| ||||||||||||||| |
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| T |
5195830 |
tttctttcatatcaatataatttg |
5195853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 5213796 - 5214018
Alignment:
| Q |
1 |
gaaattacatgcaaggatcattttcattgaccaccttggctaatcactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||| || ||||||||||||||| | |||| || | || | | |||| |
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| T |
5213796 |
gaaattacatgcaaggatcattttcattgagcactttggctaatcactccaatctccagcatctatatatttcatc--acaa-agcattggtgcaaacat |
5213892 |
T |
|
| Q |
101 |
tgaaactgaaaaaacaaaatggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaagacaaaggaagtgtcattcctact |
200 |
Q |
| |
|
|||||||||||| ||||| ||||| || ||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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|
| T |
5213893 |
tgaaactgaaaagacaaagtggttacccaaatttcaattgaagacactcattcttagaaattgcaacttaaacaaggacaaaggaagtgtcattcctact |
5213992 |
T |
|
| Q |
201 |
tttctttcttatcaatataatttgat |
226 |
Q |
| |
|
|||||||| |||||||||| |||||| |
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| T |
5213993 |
tttctttcatatcaatatagtttgat |
5214018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 90 - 224
Target Start/End: Original strand, 7142257 - 7142390
Alignment:
| Q |
90 |
ggagtacacattgaaactgaaaaaacaaaatggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaagacaaaggaagtg |
189 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||||||||| ||||||| | | |||| || ||| ||||||||||| ||||| |||||||||| || |
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| T |
7142257 |
ggagtacacgttgaaactgaaaatacaaagtggtttcctagatttcaactacatacacttatg-ttaaaaattgcaaccaaaacatggacaaaggaaatg |
7142355 |
T |
|
| Q |
190 |
tcattcctacttttctttcttatcaatataatttg |
224 |
Q |
| |
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||||||||| |||| |||| |||||| |||||||| |
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|
| T |
7142356 |
tcattcctagttttttttcatatcaacataatttg |
7142390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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