View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_547 (Length: 225)
Name: NF9264A_low_547
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_547 |
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| [»] scaffold1030 (2 HSPs) |
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Alignment Details
Target: scaffold1030 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: scaffold1030
Description:
Target: scaffold1030; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 77 - 195
Target Start/End: Complemental strand, 2136 - 2018
Alignment:
| Q |
77 |
ctaaacacctatcatatgctattcgtaccaaaaaccttttaagaaacaattaaaaccaaccaaagcacctatagtagcacctaatgttctcttctcacaa |
176 |
Q |
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||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
2136 |
ctaaacacctatcatatgctatttgtaccaaaaacctttaaaaaaacaattaaaaccaaccaaaacacctatagtagcacctaatgttctcttcgcacaa |
2037 |
T |
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| Q |
177 |
atgagaccaaataaacacc |
195 |
Q |
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| T |
2036 |
atgagaccaaataaacacc |
2018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1030; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 2332 - 2252
Alignment:
| Q |
1 |
agacctgaaaaacaaaaagaacatatatagtaaaataagcacagaaaacccttacatctcctacatcaccacaccactaaa |
81 |
Q |
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| T |
2332 |
agacctggaaaacaaaaagaacatatatagtaaaatacgcacagaaaacccttacatctcctacatcacgacaccactaaa |
2252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 77 - 195
Target Start/End: Original strand, 14279400 - 14279519
Alignment:
| Q |
77 |
ctaaacacctatcatatgctattcgtaccaaaaaccttttaagaaa-caattaaaaccaaccaaagcacctatagtagcacctaatgttctcttctcaca |
175 |
Q |
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||||||| ||||||||||||||||||| ||||||||||| || ||| ||||||||||| |||||| |||||||| |||||||||||||||||||| |||| |
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| T |
14279400 |
ctaaacagctatcatatgctattcgtatcaaaaacctttaaaaaaaacaattaaaaccgaccaaaacacctatactagcacctaatgttctcttcgcaca |
14279499 |
T |
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| Q |
176 |
aatgagaccaaataaacacc |
195 |
Q |
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| T |
14279500 |
aatgagaccaaataaacacc |
14279519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 14279230 - 14279281
Alignment:
| Q |
27 |
atagtaaaataagcacagaaaacccttacatctcctacatcaccacaccact |
78 |
Q |
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| T |
14279230 |
atagtaaaatacgcacagaaaacccttacatctcatacatcaacacaccact |
14279281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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