View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_555 (Length: 223)
Name: NF9264A_low_555
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_555 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 27 - 201
Target Start/End: Original strand, 34755217 - 34755391
Alignment:
| Q |
27 |
agaaacaaagacaattagaataaacttaccacaacaagacccttgatttgttccttggtaattttgatgtccatggtctcatcctgagcatattcaagca |
126 |
Q |
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| T |
34755217 |
agaaacaaagacaattagaataaacttaccacaacaagacccttgatttgttccttggtaattttgatgtccatggtctcatcctgagcatattcaagca |
34755316 |
T |
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| Q |
127 |
aagtatcaagaaaaactacactctgctcgccctctatgatttctccattttttcttttgttcacaatctcttgtc |
201 |
Q |
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| T |
34755317 |
aagtatcaagaaaaactacactctgctcgccctctatgatttctccattttttcttttgttcacaatctcttgtc |
34755391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 34780919 - 34780745
Alignment:
| Q |
27 |
agaaacaaagacaattagaataaacttaccacaacaagacccttgatttgttccttggtaattttgatgtccatggtctcatcctgagcatattcaagca |
126 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||| ||||||||| |
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| T |
34780919 |
agaaacaaagacaatcagaagaaacttaccacaacaagacccttgatttgttcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagca |
34780820 |
T |
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| Q |
127 |
aagtatcaagaaaaactacactctgctcgccctctatgatttctccattttttcttttgttcacaatctcttgtc |
201 |
Q |
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|||| ||||||||||| ||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34780819 |
aagtgtcaagaaaaacaacattctgctcgccatctacgatttctccattttttcttttgttcacaatctcttgtc |
34780745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 48 - 201
Target Start/End: Original strand, 34763214 - 34763367
Alignment:
| Q |
48 |
aaacttaccacaacaagacccttgatttgttccttggtaattttgatgtccatggtctcatcctgagcatattcaagcaaagtatcaagaaaaactacac |
147 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||| ||||||||||||| ||||||||||| ||| |
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| T |
34763214 |
aaactcaccacaacaagacccttgatttgttcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagcaaagtgtcaagaaaaacaacat |
34763313 |
T |
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| Q |
148 |
tctgctcgccctctatgatttctccattttttcttttgttcacaatctcttgtc |
201 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34763314 |
tctgctcgccttctacgatttctccattttttcttttgttcacaatctcttgtc |
34763367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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