View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_558 (Length: 222)
Name: NF9264A_low_558
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_558 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 31251938 - 31252154
Alignment:
| Q |
1 |
ggtgatttattaggggtagcattccaaaactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatggagtgattttatac |
100 |
Q |
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| T |
31251938 |
ggtgatttattaggggtagcattccaaaactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatggagtgattttatac |
31252037 |
T |
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| Q |
101 |
atggtaatgaaatgagataagaatcaattagatgttaattaatcatataatcaaaaggaatttgtgatgagaattatcagggccaacattaatttgtgat |
200 |
Q |
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| T |
31252038 |
atggtaatgaaatgagataagaatcaattagatgttaataaatcatagaatcaaaaggaatttgtgatgagaattatcagggccaacattaatttgtgat |
31252137 |
T |
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| Q |
201 |
gcaggagagatggattt |
217 |
Q |
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||||||||||||||||| |
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| T |
31252138 |
gcaggagagatggattt |
31252154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 25815205 - 25814990
Alignment:
| Q |
1 |
ggtgatttattaggggtagcattccaaaactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatggagtgattttatac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
25815205 |
ggtgatttattaggggtagcattccaaaactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatggggtcattttatac |
25815106 |
T |
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| Q |
101 |
atggtaatgaaatgagataagaatcaattagatgttaattaatcatataatcaaaaggaatttgtgatgagaattatcagggccaacattaatttgtgat |
200 |
Q |
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| T |
25815105 |
atggtaatgaaatgagataagaatcaa-tagatgttaattaatcataaaatcaaaaggaatttgtgatgagaattattagggccaacattaatttgtaat |
25815007 |
T |
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| Q |
201 |
gcaggagagatggattt |
217 |
Q |
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| T |
25815006 |
gcaagagagatggattt |
25814990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 73 - 217
Target Start/End: Complemental strand, 23052912 - 23052768
Alignment:
| Q |
73 |
tttatcatctaatggagtgattttatacatggtaatgaaatgagataagaatcaattagatgttaattaatcatataatcaaaaggaatttgtgatgaga |
172 |
Q |
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| T |
23052912 |
tttatcatctaatgaggtgattttatacatggtgatggaatgagatgagaatcaattagatgttaattaatcataaaatcaaaataaatttgttatgaga |
23052813 |
T |
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| Q |
173 |
attatcagggccaacattaatttgtgatgcaggagagatggattt |
217 |
Q |
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| T |
23052812 |
tttatcagaaccaacattaatatgtgatgcaggagagatggattt |
23052768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 23052952 - 23052912
Alignment:
| Q |
1 |
ggtgatttattaggggtagcattccaaaactgcataaaactt |
42 |
Q |
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| T |
23052952 |
ggtgatttattagggg-accattccaaaactgcataaaactt |
23052912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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